PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009630258.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 337aa MW: 38225.2 Da PI: 9.3033

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009630258.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	37.6	2.9e-12	16	61	2	47
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 +ie k tfskRr+g+ KKA+EL C++++ +++ s+tgk + XP_009630258.1 16 KIEKKDDLFATFSKRRAGLYKKASELIAECGVDIGIVVSSPTGKPF 61 6777777788*********************************965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	19.75	7	67	IPR002100	Transcription factor, MADS-box
SMART	SM00432	6.4E-18	7	66	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.96E-20	8	77	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.3E-11	9	29	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.7E-18	16	63	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.3E-11	29	44	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.3E-11	44	65	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MVNKKTKGRQ KIQMKKIEKK DDLFATFSKR RAGLYKKASE LIAECGVDIG IVVSSPTGKP 60 FSFFHPTDDA IIARFQNPDM QLSQTTGLVA AHARNKVNYL NSRLEELDTR EDAATAQTRF 120 YDKMTETRES GWWESIEQLN VDEVTKFETW CELDCKRIEF GLGRSAETAG ILWKGPQSIN 180 SLSPPSHPVL SILTATQSSQ SIDTRSRHSH SPPLRHRFCD QNSAYAEKNW RNGPRTYGKS 240 STPATSQERH LNAHLRKRPL LRSRSRICAH AGTTPYLLAY GNEVVIPAEV EIPSLIIIQE 300 AELSEAEWVQ KRYEQLDLID GKRMNADEAK GKFSTNW

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	XP_009630258.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA382	20	138

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36590.1	1e-26	M-type_MADS family protein