PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009630259.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 124aa MW: 14419 Da PI: 10.305

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009630259.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	59.2	5.1e-19	8	57	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 k+ie+ ++rqvtfskRr ++KKAeE+ v Cd++v + fs++g++ ++ XP_009630259.1 8 KKIEEITKRQVTFSKRRSSLIKKAEEIAVCCDVDVFFVAFSPSGRISKFC 57 689*******************************************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	21.712	1	60	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.1E-20	1	59	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.9E-17	2	22	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	5.23E-24	3	85	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.5E-19	9	56	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.9E-17	22	37	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.9E-17	37	58	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 124 aa Download sequence Send to blast
MGRKIEMKKI EEITKRQVTF SKRRSSLIKK AEEIAVCCDV DVFFVAFSPS GRISKFCNQK 60 SIEDMIHRYI NLPVERRLTH IADVQFSGLE KVEKLRHLNH IKGDVSKIHF LEKQFVSLSI 120 LSLT

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009630259.1	1e-85	PREDICTED: agamous-like MADS-box protein AGL104
Swissprot	Q9LM46	3e-22	AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBL	A0A1S3Y2L5	1e-67	A0A1S3Y2L5_TOBAC; agamous-like MADS-box protein AGL8 homolog
STRING	XP_009630259.1	5e-85	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3785	12	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77950.2	3e-12	AGAMOUS-like 67

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]