PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009630412.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Protein Properties

Length: 156aa MW: 17771 Da PI: 4.6709

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009630412.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	33.5	7.3e-11	48	130	6	95
..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEE CS B3 6 tpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvk 95 t+ v + ++lp+k +e gg + + ++W++ + y++++ +++ Wk+Fv++n+Lk+gD +vF+l+ + s+ +++v+ XP_009630412.1 48 TKTTVKPHYGMYLPRKMNKELpaGGA------PAVLTCGRKKWDMFY-YSNNK----FSAEWKKFVDDNDLKVGDGLVFELSeCStSKIHFRVQ 130 55666677778888888777754333......34556788**999.77777....8999*****************98433344445555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	4.6E-12	39	133	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.37E-15	39	133	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	10.32	43	135	IPR003340	B3 DNA binding domain
CDD	cd10017	1.04E-14	46	133	No hit	No description
Pfam	PF02362	3.4E-8	47	129	IPR003340	B3 DNA binding domain
SMART	SM01019	7.3E-5	47	135	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence Send to blast
MESKPSFVHV SNHEDYSTPE RESTGIEEID NGEYWPLSGK PYVDMILTKT TVKPHYGMYL 60 PRKMNKELPA GGAPAVLTCG RKKWDMFYYS NNKFSAEWKK FVDDNDLKVG DGLVFELSEC 120 STSKIHFRVQ ILRGDFPSEL LPEDEEGATD ANPIEL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009630412.1	1e-114	PREDICTED: B3 domain-containing protein Os04g0386900-like
Refseq	XP_016515131.1	1e-114	PREDICTED: B3 domain-containing protein Os04g0386900-like
TrEMBL	A0A1S4DNX0	1e-113	A0A1S4DNX0_TOBAC; B3 domain-containing protein Os04g0386900-like
STRING	XP_009630412.1	1e-114	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1819	21	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33280.1	1e-07	B3 family protein