PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009630484.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 248aa MW: 26954.6 Da PI: 7.8858

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009630484.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	93.8	1.9e-29	4	107	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++C + p++ p++q++++ +++k++G++ +l+l+++ p++ r++++ssl+yeA+ r+ +P+yG++g+++++++ql+q+ XP_009630484.1 4 SCNGCRVLRKGCNEKCSIKPCLqwiksPEAQSNATLFLAKFYGRAGLLNLINSGPDHLRPAIFSSLLYEACGRIVNPIYGSTGLLTSGNWQLCQA 98 6********************************************************************************************** PP DUF260 91 kaelallke 99 +++++l ++ XP_009630484.1 99 AVDAVLSGA 107 *99987765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.369	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.9E-23	4	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MRLSCNGCRV LRKGCNEKCS IKPCLQWIKS PEAQSNATLF LAKFYGRAGL LNLINSGPDH 60 LRPAIFSSLL YEACGRIVNP IYGSTGLLTS GNWQLCQAAV DAVLSGASIE KLSPDSAANT 120 VCPSLKVCDI RHVSKENDLT PDLHKVKMRT KFKRVSAKPQ QRNQSPEVDY AARVMWSWSH 180 KEEEVIGSPS RDSGLSQQRE GESGDADSGS VETVEASLAK LDESDVGLEL TLGLQPLMKS 240 PECGSTRS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009630484.1	0.0	PREDICTED: LOB domain-containing protein 40-like
Swissprot	Q9M886	1e-76	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A1S4AMS3	0.0	A0A1S4AMS3_TOBAC; LOB domain-containing protein 40-like
STRING	XP_009630484.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA886	24	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	6e-79	LOB domain-containing protein 41