PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009630818.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 239aa    MW: 27970.9 Da    PI: 6.7595
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009630818.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM73.64.8e-23121393127
             NAM   3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykv.ePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                     +G+rFhPt+ el+ ++Lk+ ++g++ l++   ++ +diy    Pw++  + ++ eek  yfF++ +k++++ +r +r+ ++g+Wk +    ++++
  XP_009630818.1  12 MGVRFHPTEVELI-NFLKRFLKGEPlLSECPNFQLADIYGDqPPWEIFGTSDHlEEKVRYFFTRLKKQKSEHTRVRRTCANGTWKGQTGIDPIKN 105
                     7************.9**********53443559999***87368***743333266677**************************888889**** PP

             NAM  95 kkgelvglkktLvfykgrapkgektd.Wvmheyr 127
                      kg++vg ++ + f + r+++ge+ + W+m+ey 
  XP_009630818.1 106 GKGTVVGFRRCFKFQTSRSKEGEHNKiWLMKEYF 139
                     9**************999999986544******6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-278162IPR003441NAC domain
PROSITE profilePS5100526.16810163IPR003441NAC domain
PfamPF023659.6E-1512138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MSTLPVRRGC IMGVRFHPTE VELINFLKRF LKGEPLLSEC PNFQLADIYG DQPPWEIFGT  60
SDHLEEKVRY FFTRLKKQKS EHTRVRRTCA NGTWKGQTGI DPIKNGKGTV VGFRRCFKFQ  120
TSRSKEGEHN KIWLMKEYFV GDDFFREYNI PKEDIVVCRI KKNIRSKKNY GVNMEEQDVP  180
KVIEAMLHEK DEDYCTTVQP TPICQAEHQV NDCSNYQEEI NWADDVLLDI DDFGNIICC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU7532600.0EU753260.1 Nicotiana tabacum NAC transcription factor (NAC3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016515059.11e-175PREDICTED: protein SOMBRERO-like
TrEMBLA0A1S4DPJ81e-173A0A1S4DPJ8_TOBAC; protein SOMBRERO-like
STRINGXP_009630818.11e-180(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8141386
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.13e-17NAC domain containing protein 2