PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009630947.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Trihelix

Protein Properties

Length: 999aa MW: 111660 Da PI: 7.1129

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009630947.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	28.3	4.6e-09	227	287	21	82
trihelix 21 lrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 +rgk ++ + +ev++++ ++g++r +k+ kw+n+ ++++k+ e+e++ + e+ + +yf XP_009630947.1 227 QGRGKTRADKDREVADFLNRHGVSRDAKTAGTKWDNMLGEFRKVYEWERGAEREQ-GSKSYF 287 45788999999**************************************974444.355666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.510.10	2.2E-6	813	946	No hit	No description
CDD	cd00180	9.61E-16	831	984	No hit	No description
SuperFamily	SSF56112	1.35E-16	841	983	IPR011009	Protein kinase-like domain

Sequence ? help Back to Top
Protein Sequence Length: 999 aa Download sequence Send to blast
MDENKGETTK KQPPPPQQQH LSNSPNDSNQ DSPDNTIPQQ QQQQPPQTVI SGASYISSSL 60 YNIPGGAATT SVSFEQQQQQ LQFEVVNPKR PRYTASQWKF IPSSSSQQQQ QNPSQVNILS 120 TESSPISPSP QAAAATNPQT QAASSSDTAS SPSHSPRPSA SGQETSKGEG GEQVHQQFRK 180 GKYVSPVWKP NEMLWLARAW KIQYQGGSSE LHLEGSQEMS TGAGVQQGRG KTRADKDREV 240 ADFLNRHGVS RDAKTAGTKW DNMLGEFRKV YEWERGAERE QGSKSYFRLS PYERKMNRLP 300 ASFDEEVFEE LSQFMGSRMR SPQTRGVGAG FGSQANIVVS LSDTVTKSLP PPPPFREDDL 360 PLSARAKQLA IPISGTEALL HGTRSGFLGY DTTTTSSLDI GGPSSSASSK ELRRIGKIRM 420 IWEESVSLWA EEGEHHRGRV KLQGTSFLNA DEIAFLDDST VACTMEAFED GPMKGFSVDR 480 FLSGVQLKVF GRRKSSSAPA LSGPNERLQL PSSEFPIKST TPWEFQDPTE YYVGCLRSPP 540 PTLPSLFELS WHLQQPPPEE LRFPLRRDVF KDLPQGKELF FTISTELLDC RGITYEVLSS 600 IMRPNPSLST ATDRDSYIGL WDDCINRIIS KFCSIEMVFV RKSNSSFSLA ETVQDQWPNV 660 TAFLRNFCLW RGEETGQLSE GQLDPSSSIV EKLLWTYMDL PYVLGYYAVG FIVTFCALSR 720 SQDRIIRTDL YTVDLSTPVE RLKALVPCWR IAGLLPLLAD RCFHYMSSNG SNLKHLPYTD 780 FERIDLGNGN IVEMTPNTVV RYFSSKRKWV AVKEIYDFLD HRIPHAEFVV RASEKDLALV 840 FKPRGCKFKP ANCDQLIEAL KQITKALVAL HDLSFMHRDL GWDKVMRRSD RENEWFITGF 900 DEAVSSPQLY PYGGAAAATA ASGRHPPEMV RNYHNVKVDV WGIGQLVKSC GLVGVPKLLR 960 ELQNRCLDQN PEQRPTAADC YRHLLQLQSS MSAAAAGGY

Sequence ? help Back to Top

Protein Sequence Length: 999 aa Download sequence Send to blast

MDENKGETTK KQPPPPQQQH LSNSPNDSNQ DSPDNTIPQQ QQQQPPQTVI SGASYISSSL  60
YNIPGGAATT SVSFEQQQQQ LQFEVVNPKR PRYTASQWKF IPSSSSQQQQ QNPSQVNILS  120
TESSPISPSP QAAAATNPQT QAASSSDTAS SPSHSPRPSA SGQETSKGEG GEQVHQQFRK  180
GKYVSPVWKP NEMLWLARAW KIQYQGGSSE LHLEGSQEMS TGAGVQQGRG KTRADKDREV  240
ADFLNRHGVS RDAKTAGTKW DNMLGEFRKV YEWERGAERE QGSKSYFRLS PYERKMNRLP  300
ASFDEEVFEE LSQFMGSRMR SPQTRGVGAG FGSQANIVVS LSDTVTKSLP PPPPFREDDL  360
PLSARAKQLA IPISGTEALL HGTRSGFLGY DTTTTSSLDI GGPSSSASSK ELRRIGKIRM  420
IWEESVSLWA EEGEHHRGRV KLQGTSFLNA DEIAFLDDST VACTMEAFED GPMKGFSVDR  480
FLSGVQLKVF GRRKSSSAPA LSGPNERLQL PSSEFPIKST TPWEFQDPTE YYVGCLRSPP  540
PTLPSLFELS WHLQQPPPEE LRFPLRRDVF KDLPQGKELF FTISTELLDC RGITYEVLSS  600
IMRPNPSLST ATDRDSYIGL WDDCINRIIS KFCSIEMVFV RKSNSSFSLA ETVQDQWPNV  660
TAFLRNFCLW RGEETGQLSE GQLDPSSSIV EKLLWTYMDL PYVLGYYAVG FIVTFCALSR  720
SQDRIIRTDL YTVDLSTPVE RLKALVPCWR IAGLLPLLAD RCFHYMSSNG SNLKHLPYTD  780
FERIDLGNGN IVEMTPNTVV RYFSSKRKWV AVKEIYDFLD HRIPHAEFVV RASEKDLALV  840
FKPRGCKFKP ANCDQLIEAL KQITKALVAL HDLSFMHRDL GWDKVMRRSD RENEWFITGF  900
DEAVSSPQLY PYGGAAAATA ASGRHPPEMV RNYHNVKVDV WGIGQLVKSC GLVGVPKLLR  960
ELQNRCLDQN PEQRPTAADC YRHLLQLQSS MSAAAAGGY

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009630947.1	0.0	PREDICTED: uncharacterized protein LOC104120810
TrEMBL	A0A1S3Z1J3	0.0	A0A1S3Z1J3_TOBAC; uncharacterized protein LOC107781956
STRING	XP_009630947.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12936	14	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	1e-07	Trihelix family protein