PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009631052.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 357aa    MW: 42220.3 Da    PI: 8.5297
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009631052.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.63.5e-1625116198
                     EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     ffk++   ++  ++rl++p kf+ +  + + +     +l+ +sg++W v++  r+ ++ yv+ +GW+ Fvk++ L+e D +vFk+++ s+f   v
  XP_009631052.1  25 FFKIM---MNDFRRRLRIPQKFVLNLkD-SYKLLGRKILRGPSGNTWAVEV-KRREDDDYVFCNGWELFVKDHCLEEADLLVFKMKSFSSF--DV 112
                     77777...4556678********88853.4444446678************.4777777*************************7654888..88 PP

                     EEE- CS
              B3  95 kvfr 98 
                     ++f+
  XP_009631052.1 113 SIFD 116
                     8887 PP
2B357.91.8e-18241326189
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     ff  ++++ +  +g+l lpkk a++++ kk e++ l++ ++sgr+W v +  + ++++ v+++GW++Fv +n+L+e D++vF+l +  +
  XP_009631052.1 241 FFLMTMQPTHVYLGQLKLPKKWANRYMTKKYETINLRI-HSSGRTWAVAV--SYRQEGLVMQSGWEDFVMDNDLEECDICVFELAQGGK 326
                     566677888888999***********988877666664.37*********..777778*************************986543 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.9E-2021120IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.70322118IPR003340B3 DNA binding domain
SuperFamilySSF1019364.12E-2022123IPR015300DNA-binding pseudobarrel domain
CDDcd100171.14E-1725116No hitNo description
SMARTSM010191.2E-1025118IPR003340B3 DNA binding domain
PfamPF023623.4E-1325116IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-24235340IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.9E-22236326IPR015300DNA-binding pseudobarrel domain
CDDcd100171.36E-14240340No hitNo description
SMARTSM010192.2E-11241342IPR003340B3 DNA binding domain
PROSITE profilePS5086312.872241336IPR003340B3 DNA binding domain
PfamPF023621.8E-16241329IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MATICERCKV IEKQKYWEEF DKHQFFKIMM NDFRRRLRIP QKFVLNLKDS YKLLGRKILR  60
GPSGNTWAVE VKRREDDDYV FCNGWELFVK DHCLEEADLL VFKMKSFSSF DVSIFDLSAC  120
EKEETFFAKK NRNPCKHPDE VTDEHTSDQK ESSENEHSSE EESYEKKYVF HSSQLGKGKK  180
MKKILIAKQQ INRKRECTPS SPRKKNIEPE EKMPMFSNRR QVTEKEEVFQ QASRHKSSVP  240
FFLMTMQPTH VYLGQLKLPK KWANRYMTKK YETINLRIHS SGRTWAVAVS YRQEGLVMQS  300
GWEDFVMDND LEECDICVFE LAQGGKHNLI PVVLDVYIHR VKDEIMRPSC SNSTSID
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009631052.10.0PREDICTED: B3 domain-containing protein REM16-like
TrEMBLA0A1S4DND10.0A0A1S4DND1_TOBAC; B3 domain-containing protein REM16-like
STRINGXP_009631052.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA136031216
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-30B3 family protein