PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009631287.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 121aa MW: 14063.8 Da PI: 5.7286

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009631287.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	36	1.9e-11	12	111	2	98
DUF260 2 CaaCkvlrr..kCakdCvlapyfpaeqpkkfanvhklFGasnvlk.llkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 C C ++ kC+++C+l + f +++k+f + ++FG ++ lk l+++ ++++++ ++ ++e +d v G+++ i++l+ q e ka XP_009631287.1 12 CFPCSLQSAksKCQSECTLGRFFTRSEQKHFYELCEFFGSQETLKdKLDEIADDRKQEWIQNRLFEITFHNKDAVGGCAREIKDLKIQAEDWKAR 106 556766655459*************************9876653899***************************************99998 PP DUF260 94 lallk 98 +++l XP_009631287.1 107 ADKLT 111 87765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	2.0E-10	13	110	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 121 aa Download sequence Send to blast
MASSSSKEES LCFPCSLQSA KSKCQSECTL GRFFTRSEQK HFYELCEFFG SQETLKDKLD 60 EIADDRKQEW IQNRLFEITF HNKDAVGGCA REIKDLKIQA EDWKARADKL TENAVTEHFR 120 I

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	XP_009631287.1	4e-84	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.4	7e-08	LBD family protein