PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009631302.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 338aa    MW: 37491.1 Da    PI: 6.2565
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009631302.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.15.7e-19244277134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C++C++ kTp+WR gp g+ktLCnaCG++y++ +
  XP_009631302.1 244 CTHCQVQKTPQWRAGPLGPKTLCNACGVRYKSGR 277
                     *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.7E-805330IPR016679Transcription factor, GATA, plant
SuperFamilySSF577167.6E-15236300No hitNo description
PROSITE profilePS5011412.308238274IPR000679Zinc finger, GATA-type
SMARTSM004013.3E-15238292IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.5E-14241275IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.11E-14243292No hitNo description
PROSITE patternPS003440244269IPR000679Zinc finger, GATA-type
PfamPF003201.1E-16244277IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MELIEARALK SSFLSDMAMK TSQQVFLDDI WCVTGINNVP SDDFSVDDLL DFSDKDFKDG  60
QSLQELHEDD EKDSFSGSSQ HRNSQVSNFS CMGSFSGELP VPVDELENLE WLSQFVDDST  120
SEFSLLCPAG SFKDKTGGFQ VSRSEPDVRP VVQKLRVPCF PLPVVQKPRT KRSRPAGRKW  180
SFSSPTVSAD SCSPTSSSYG SSPFPPVLFV NPVLDGDLFC SVEKPPLKKP KKISTAETGS  240
GRRCTHCQVQ KTPQWRAGPL GPKTLCNACG VRYKSGRLFP EYRPACSPTF SQEVHSNSHR  300
KVLEMRRKKE SGEVTDSGLA FNLLSFEMNE NPVHSEPV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1076920.0AB107692.1 Nicotiana tabacum AGP4 mRNA for AG-motif binding protein-4, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009631302.10.0PREDICTED: GATA transcription factor 5-like
TrEMBLA0A1S3ZXK10.0A0A1S3ZXK1_TOBAC; GATA transcription factor
STRINGXP_009631302.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11542481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.22e-57GATA transcription factor 5