PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009631342.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 488aa    MW: 51449.7 Da    PI: 8.1526
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009631342.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.12.5e-124973327
                    S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                    ++ C +++rtG+C yG+rC+F+H+p
  XP_009631342.1 49 EADCIYYLRTGFCGYGSRCRFNHPP 73
                    689********************97 PP
2zf-CCCH375.5e-1298122327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C++++rtG Ck+G++Ck++H++
  XP_009631342.1  98 QPVCQYYMRTGMCKFGASCKYHHPR 122
                     689********************96 PP
3zf-CCCH35.91.2e-11143168227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++C f+++tG+Ck+G +CkF+H++
  XP_009631342.1 143 GEKECLFYMKTGQCKFGITCKFHHPQ 168
                     7899********************97 PP
4zf-CCCH31.53.1e-10311337127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C+++ ++G Ck+G++C+++H+p
  XP_009631342.1 311 PGQPECQYYIKYGDCKFGSSCRYHHPP 337
                     5789*********************97 PP
5zf-CCCH35.41.9e-11359383327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      ++C++++++G Ck+G++CkF H++
  XP_009631342.1 359 APICSHYSQNGVCKFGPSCKFDHPM 383
                     589********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.7094674IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-64673IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-64974IPR000571Zinc finger, CCCH-type
PfamPF006428.8E-104973IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-55272IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.55495123IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-795122IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-697122IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-898122IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-5100122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.446141169IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-5141168IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-6143169IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-9143168IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.051310338IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-4310337IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-6312337IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-5314337IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-6355382IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.756356384IPR000571Zinc finger, CCCH-type
SMARTSM003564.2E-7356383IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-8359383IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-5361381IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MERYSGNQPM EGAPVSEWTS PGGDTGLEEA MWQLSVGSGS ESYPERPNEA DCIYYLRTGF  60
CGYGSRCRFN HPPDRNLVMG AARAIGGGEE KYPERVGQPV CQYYMRTGMC KFGASCKYHH  120
PRQGGGSPAL MTHNIYGYPL RPGEKECLFY MKTGQCKFGI TCKFHHPQPA GVQVPTSAAR  180
PGAFPLPAAV PPPATYPAVQ SPYVQSAQQY GVVAGNWPFV RPTLLPGSYG TYGPMLFPPG  240
MVPVPGWTPY PASASQVPSL TTQPAAGAGP VYGLTQLSAS APAYMGPYTS LTASIGPSGS  300
IQKEHAFPER PGQPECQYYI KYGDCKFGSS CRYHHPPEWS GPKSGFILSA MGLPLRPGAP  360
ICSHYSQNGV CKFGPSCKFD HPMGISYSPS ASSLVDMPVA PYPVGSSVGT LAPSSSSSDL  420
KPELVSGSTK DGFSTQTSSM SSSSGSVGSM FSKGGPVSHS GVQQSIQNST SSSGSSSTGR  480
DGEAQTSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009631342.10.0PREDICTED: zinc finger CCCH domain-containing protein 32-like
SwissprotQ84W911e-156C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A1S4ANC20.0A0A1S4ANC2_TOBAC; zinc finger CCCH domain-containing protein 32-like
STRINGXP_009631342.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24122459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-150C3H family protein