PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009631560.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family FAR1
Protein Properties Length: 784aa    MW: 89778.3 Da    PI: 6.9952
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009631560.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR197.21.9e-3076170291
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                     fYn YA++vGFs+r+s s++s+r+g i++r fvC +eg+r e++k        + +r+raetr+gCka+l+vk +++g+w+v+ +++eHnHel+p
  XP_009631560.1  76 FYNLYARRVGFSTRISMSRRSRRDGAIIQRSFVCAREGFRVEKEKPghdggGARIKRPRAETRVGCKAMLVVKIQNSGRWVVSGFVKEHNHELVP 170
                     9*****************************************9999999999999**************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.5E-2876170IPR004330FAR1 DNA binding domain
PfamPF105515.4E-32291383IPR018289MULE transposase domain
PfamPF044341.1E-10560605IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096610.967571607IPR007527Zinc finger, SWIM-type
SMARTSM005752.2E-8582609IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 784 aa     Download sequence    Send to blast
MEFEPLGIRN DVIEFDMFGL GVGDETIDIE HPIEEGENNQ LMDPFDGIVS GRISGDMNLE  60
SYEGMEFESE EAAKAFYNLY ARRVGFSTRI SMSRRSRRDG AIIQRSFVCA REGFRVEKEK  120
PGHDGGGARI KRPRAETRVG CKAMLVVKIQ NSGRWVVSGF VKEHNHELVP PDKVHCLRSH  180
RHVSGPAKLL IDTLQGAGIG PSGIMSALIK EYGGISSVGF TERDCRNYMR SSKQRTLGGD  240
PQTLLDYLKQ KHLENPSFFY AVQGDEDHCM SNIFWADPEA RSNFIYFGDT VTFDTTYRSN  300
RYRLPFAPFT GVNHHGQPVL FGCALLLNES EASFSWLFRT WLMAMCGKPP LSITTDHDRV  360
IRLAVRQVFP EARHRFCKWH IFKECQEKLS HLLSEHINFE AEFHKCVSFT ESIEEFEACW  420
FTLIDKYDLG ENEWLQAIYV DRKQWVPVYL RDTFFAEISV MQRSDSMNSY FDGYVNASTT  480
LQQFIKLYEK AVESRYEKEV KADYDTMHIG PALKTPSPME KQAAEIYTRK LFIKFQEELV  540
ETLTFLATKV DDNEATTVFQ VAKFGESHKS YLVHYNVREI KASCSCQMFE FSGLLCRHIL  600
TVFRVTNVLT LPPCYVLKRW TRNAKSGLML EEQTCNLLNN CQESFNVRYK NLQLEALKYV  660
DEGVKDEECY QVAMDALREA AHKVAIAKKT DGGVSNSSGT CKGESATQES HVNNPFEARQ  720
LGGCPSTPVD EQDKKIQKLT RKLERARQKC ELYRTNLLTV LKDIEQLKLQ LTVKVQSIKL  780
GMKN
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009631560.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
SwissprotQ9SZL80.0FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A1S4AX630.0A0A1S4AX63_TOBAC; protein FAR1-RELATED SEQUENCE 5-like isoform X1
STRINGXP_009631560.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43522109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.10.0FAR1-related sequence 5
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]