PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009631626.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 224aa    MW: 25933.6 Da    PI: 9.2917
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009631626.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.56.5e-131469147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.........TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.........kgRtlkqcksrwqky 47
                     +g+WT+eEd ll +++++ G g+W++ +             +gRt++++k+rw++ 
   XP_009631626.1 14 KGAWTAEEDMLLTNYIELNGEGNWRSLPMNAErkfqsrgrlQGRTDNEIKNRWNTN 69
                     79*****************************9*********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-17577IPR009057Homeodomain-like
SuperFamilySSF466891.94E-13877IPR009057Homeodomain-like
PROSITE profilePS5129416.754974IPR017930Myb domain
SMARTSM007171.7E-101372IPR001005SANT/Myb domain
PfamPF002498.7E-111470IPR001005SANT/Myb domain
CDDcd001676.25E-91670No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MGRAPCCSKV GIRKGAWTAE EDMLLTNYIE LNGEGNWRSL PMNAERKFQS RGRLQGRTDN  60
EIKNRWNTNL LKKLKVAGIQ PKPQKLTAKR TKATKKKRRR GRKAKKPESE IEKDEKIQVH  120
IPKPIRLYSL SSSQSSFQDK AAHNIITMLS YEEVDKNKEE EKIQEPLIPS SSSYLFDEKG  180
NEIYELFDEL LNGCDFSTEC LEPTSSCYML KEVYTEYFQL LSEI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19499KKKRRR
294102KKKRRRGRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009631626.11e-166PREDICTED: transcription factor MYB12-like
TrEMBLA0A1S4BAL31e-139A0A1S4BAL3_TOBAC; transcription factor MYB12-like
STRINGXP_009631626.11e-165(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1824834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28110.11e-22myb domain protein 41