PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009631860.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARF
Protein Properties Length: 632aa    MW: 71399.1 Da    PI: 9.1712
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009631860.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.82.4e-2487187299
                     EEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                      k+ltpsdv+++g l++pk+ a+e+       +  +   ++l+ +d++g +W++++ yr++s+r+++++GW++Fv+a++L +gD+++F   + ++
  XP_009631860.1  87 SKKLTPSDVNTHGGLSIPKQLADECfpplnndQDFP--AQDLVAKDLNGLEWKFRHVYRGQSRRHLISNGWSRFVSAKKLVAGDTLIFV--RGKN 177
                     599************************998653333..348************************************************..3489 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                      el+v v+r+
  XP_009631860.1 178 YELYVAVRRA 187
                     999**99986 PP
2Auxin_resp84.72e-28212299183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.....sGtvvgvsdldpvrWpnSkWrsLk 83 
                     a ha+s++++F+++Y+P+++++ F++++++++ka ++ + vGm f m fe+ +    r+     sGt+v+v+d+dp+rWp+S Wr+Lk
  XP_009631860.1 212 AYHAVSSGTMFTIYYRPWTCPAAFIIPYNQYMKASEIDYEVGMTFNMPFESHELDCGRTvcpifSGTIVDVKDFDPIRWPGSDWRCLK 299
                     689************************************************98876654457789*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.57E-2977199IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.3E-3779200IPR015300DNA-binding pseudobarrel domain
CDDcd100171.58E-2186186No hitNo description
SMARTSM010193.3E-2286188IPR003340B3 DNA binding domain
PROSITE profilePS5086314.01586188IPR003340B3 DNA binding domain
PfamPF023622.1E-2187187IPR003340B3 DNA binding domain
PfamPF065071.4E-25212299IPR010525Auxin response factor
PfamPF023095.3E-7535618IPR033389AUX/IAA domain
PROSITE profilePS5174516.751540622IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 632 aa     Download sequence    Send to blast
MVFYYPQGHI EQIEACMNED GLMPMPAYNV PYKILCRVVS VRLQAESNTD EVFAEITLLP  60
HLGTREPILA ERSPLFSRAK SDVHTYSKKL TPSDVNTHGG LSIPKQLADE CFPPLNNDQD  120
FPAQDLVAKD LNGLEWKFRH VYRGQSRRHL ISNGWSRFVS AKKLVAGDTL IFVRGKNYEL  180
YVAVRRAKKQ QTSSSTSILS SHYMQHGMLS NAYHAVSSGT MFTIYYRPWT CPAAFIIPYN  240
QYMKASEIDY EVGMTFNMPF ESHELDCGRT VCPIFSGTIV DVKDFDPIRW PGSDWRCLKV  300
KWNHAKLMPV RPERVSPWSI VAIGITKRKR RSFSSYPSKA QPLDPANPFG VKDCLMKSSV  360
EHSPPWNSRV LQGQEKAVNA YEENAFRRPH DLRQPPQRKL RWRRGQVRLE NQQHNHILDP  420
WLDFIGKEVH GTSPSSNGFS NLQSSKIPSF ASESLSIPKI VDYRNSNSKG NVESEVMGSQ  480
PTGGSKLKLF GVDILNGPES PSQHGSKLTH FGSFPAASKT VNFLEQSKST SGNSDTQCSR  540
SCTKVLKYGC ALGRSIDMSR VKGYGELISE LDKLFGFEGS LLDGSKDWHV TYQDREGNTK  600
LLGDYPWSDF QAMVRKMFIC PIGADYLADR SF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-102232041352Auxin response factor 1
4ldw_A1e-102232041352Auxin response factor 1
4ldw_B1e-102232041352Auxin response factor 1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3402580.0DQ340258.1 Nicotiana tabacum ARF2-like protein mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009631860.10.0PREDICTED: auxin response factor 2-like isoform X2
RefseqXP_018622207.10.0PREDICTED: auxin response factor 2-like isoform X2
TrEMBLA0A1S3XP510.0A0A1S3XP51_TOBAC; Auxin response factor
STRINGXP_009631858.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.31e-114auxin response factor 2