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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | XP_009631865.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family | FAR1 | ||||||||
| Protein Properties | Length: 150aa MW: 17338.8 Da PI: 4.5273 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 33.4 | 1.5e-10 | 73 | 120 | 43 | 91 |
FAR1 43 eekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91
++ ++k r++++++r +C+a+++ +e++g w+v+k++++HnH+l p
XP_009631865.1 73 KDAM-SRKPRNKHVTKRRNCHARINEILEENGSWHVSKMVKKHNHQLEP 120
3333.478899999************9*******************975 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03101 | 3.4E-8 | 73 | 120 | IPR004330 | FAR1 DNA binding domain |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 150 aa Download sequence Send to blast |
MNENEWVNID SNDNFNDGED HFDDVAAVDD DDDDDDDDNH YLEEEGEGGE MSNEFNEEDL 60 VIGPITEMRF SNKDAMSRKP RNKHVTKRRN CHARINEILE ENGSWHVSKM VKKHNHQLEP 120 ALSRFMTGHR SLSNSLKRAL TAKDITSLRP |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_009594633.1 | 4e-59 | PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like | ||||
| TrEMBL | A0A1J6IF53 | 5e-57 | A0A1J6IF53_NICAT; Uncharacterized protein | ||||
| STRING | XP_009631865.1 | 1e-106 | (Nicotiana tomentosiformis) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA1301 | 9 | 43 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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