PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009757642.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 413aa    MW: 45237.5 Da    PI: 7.5418
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009757642.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.5e-12341386655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri +++ +L++l P+     +k  + a++L +Av+YIk+Lq
  XP_009757642.1 341 SIAERMRRTRISERMKKLQDLFPNM----DKQTNTADMLDLAVDYIKDLQ 386
                     689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.57335385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.37E-16338403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.16E-12339390No hitNo description
Gene3DG3DSA:4.10.280.104.6E-15340402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.4E-13341391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.9E-9341386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MFSSTVPISI EMDKFNSFLF ASGGGGSSNF KNGGELQGME NEFLRNKEIM SSDYFQQQSS  60
QIHQQQSNNN GGGLTRYRSA PSSFFAGILD GDGNNSGDNF ITHDGSSSSD SESMFTALLN  120
NNNDNNNNNN NNNNNVTVSG TRDLNDQISK NQLQFASSSS SSMKQEIGEE IKFASSAMGS  180
YGVGVQMQSG VRLSNVNGGG SNNLIRQSSS PAGFFNGFDI TREVGNYRAS SGANMSFSSA  240
QSSTSNFMPS IAENESWNDS SFHSLKRNRD GDLKVFSNDF NGITSPNGES RNYTTSGLTH  300
HLSLPKTSSE MAAIEKYLQF QQDSVPCKIR AKRGCATHPR SIAERMRRTR ISERMKKLQD  360
LFPNMDKQTN TADMLDLAVD YIKDLQKQVQ TLTDKKAKCS CPSKQLQYSN GTT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF3274393e-74JF327439.1 Nicotiana attenuata clone NA541 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009757642.10.0PREDICTED: transcription factor bHLH130-like
TrEMBLA0A1U7UNB40.0A0A1U7UNB4_NICSY; transcription factor bHLH130-like
STRINGXP_009757642.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44352238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.15e-59bHLH family protein