PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009757729.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 146aa    MW: 16167.6 Da    PI: 4.9692
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009757729.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.52.5e-11103136139
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgta 39 
                     s+y+GV++++++grW+++I+d       k+++lg f+ta
  XP_009757729.1 103 SQYRGVTFYRRTGRWESHIWDG-----GKQVYLGGFDTA 136
                     78*******************3.....5*********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.5E-5103135IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-7103137IPR016177DNA-binding domain
PROSITE profilePS5103210.85104146IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-5104137IPR001471AP2/ERF domain
SMARTSM003800.0018104144IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MFDLNLSSED VPVESRTSNS SIVNMETSSS TAGDDEYEES GNRSGFVLKE LFPSVSGEAE  60
LPQQQCLDLS ANYGASNEQS IVVSAQGRSQ VKKSRRGPRS RSSQYRGVTF YRRTGRWESH  120
IWDGGKQVYL GGFDTAHTVR DIVDMS
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009757729.11e-104PREDICTED: ethylene-responsive transcription factor RAP2-7-like
SwissprotQ9LVG21e-26TOE2_ARATH; AP2-like ethylene-responsive transcription factor TOE2
TrEMBLA0A1U7V6651e-103A0A1U7V665_NICSY; ethylene-responsive transcription factor RAP2-7-like
STRINGXP_009757729.11e-103(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2005222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60120.11e-21target of early activation tagged (EAT) 2