PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009758423.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 251aa    MW: 28595.3 Da    PI: 8.0157
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009758423.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA611.5e-19183217135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cg+ kTp+WR gp g+ktLCnaCG++y++ +l
  XP_009758423.1 183 CQHCGVDKTPQWRAGPMGPKTLCNACGVRYKSGRL 217
                     *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.057177213IPR000679Zinc finger, GATA-type
SMARTSM004012.9E-18177231IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.55E-16179241No hitNo description
Gene3DG3DSA:3.30.50.105.5E-15180215IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.85E-15182230No hitNo description
PROSITE patternPS003440183208IPR000679Zinc finger, GATA-type
PfamPF003202.2E-17183217IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MNMVEVLDST TCFMVDDDIL NFSLDEEKHP SISSSSLDSS LPDDHSRSFH EYVEEELEWL  60
SNKDAFPAVE FDIFSENIPN VIFDHHSPVS VLENGSSIST NNNSCIENDK ENAFMIGCGS  120
LQVPVNYPVR ARGKRRRRIS FADLTNERCV WGRKLKFKNN KQEWELLSLP MTKAKRASIG  180
RRCQHCGVDK TPQWRAGPMG PKTLCNACGV RYKSGRLLPE YRPANSPTFS ANLHSNSHRK  240
VMEMRKQRIG I
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133138KRRRRI
2134155RRRRISFADLTNERCVWGRKLK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754443e-76HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009758423.10.0PREDICTED: GATA transcription factor 1
SwissprotQ8LAU98e-43GATA1_ARATH; GATA transcription factor 1
TrEMBLA0A1U7UW560.0A0A1U7UW56_NICSY; GATA transcription factor 1
STRINGXP_009758423.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40762445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.16e-45GATA transcription factor 1