PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009758477.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 253aa    MW: 28845.9 Da    PI: 9.3488
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009758477.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22.1e-1861109254
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54 
                     +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ + 
  XP_009758477.1  61 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARLMC 109
                     69******9.**********8.....334**********************8775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.25E-3560120No hitNo description
SuperFamilySSF541717.19E-2161120IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.8E-3461118IPR001471AP2/ERF domain
PfamPF008473.5E-1161110IPR001471AP2/ERF domain
PROSITE profilePS5103221.1461118IPR001471AP2/ERF domain
SMARTSM003804.1E-4061124IPR001471AP2/ERF domain
PRINTSPR003674.8E-116273IPR001471AP2/ERF domain
PRINTSPR003674.8E-1184100IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MFLSRKCNYK NPPQSPPHSP SLTIPKSFPS FPFFLIQAFS QTHKRQLQLA LAFTMARPQQ  60
RYRGVRQRHW GSWVSEIRHP LLKTRIWLGT FETAEDAARA YDEAARLMCG PRARTNFPYN  120
PNMPQTSSSK LLSATLTAKL HKCYMASLQM AKNSAQEQQQ QPPRKIQTSY AQTAVANVGN  180
HVAYETKPQM LMSKPTFLAQ EQEGANWGVM KVEAVEHTPQ FINTLEDDDI EQMIEELLDY  240
GSIELCSVVS SHQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1760122467ATERF1
3gcc_A1e-1760122467ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009758477.10.0PREDICTED: ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW53e-73ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A1U7UQU50.0A0A1U7UQU5_NICSY; ethylene-responsive transcription factor ERF003-like
STRINGXP_009758477.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13622476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.13e-52ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]