PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009758954.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 325aa    MW: 36687 Da    PI: 5.6606
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009758954.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.41.7e-102512911055
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r+RR+riN+++ +L++l+P+      +K++ +++Le+Av Y+k Lq
  XP_009758954.1 251 RKRRERINERLRTLQTLIPNG-----TKVDISTMLEEAVLYVKFLQ 291
                     9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.01E-13241306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.9241290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.4E-12246300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.2E-11247296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.47E-11250295No hitNo description
PfamPF000109.1E-8251291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MEPVASISGE WSFFSGMYLT EEADFMAHLL GNCSLPNELP STYWTGHEST MNMGGAREVP  60
FYSSNHTNNT MYSGGSGSCF PPRSHESYYS SYSRPILMRN DSSITMEYGL VEGQINPIEA  120
DDFLNRDHVS NDSMEYNENM PEAVLDGNGL QLGRRDYEQF PEDKMDSSSE SSKKRSRLHG  180
PGHVPKNKRS GKLEKDLKSG EMDGKNKVVL QRQNSTISCC SEDESNVSHV LTRKTRASRG  240
SATDPQSLYA RKRRERINER LRTLQTLIPN GTKVDISTML EEAVLYVKFL QLQIKLLSSD  300
DLWMYSPIAY NGMDIGLDLR IDVPK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755224e-33HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009758954.10.0PREDICTED: transcription factor bHLH84-like isoform X1
TrEMBLA0A1U7V9K00.0A0A1U7V9K0_NICSY; transcription factor bHLH84-like isoform X1
STRINGXP_009758954.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63922101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.12e-46bHLH family protein