PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009758957.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 247aa MW: 28197.1 Da PI: 4.5986

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009758957.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.1	4.9e-11	40	86	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + n + RR+++ +++ Lrel+P + K++ a+iL A++YI+ Lq XP_009758957.1 40 SRNTTRQWRREQVDKRIKALRELIPGC-----DKVDQASILDDAIKYIQALQ 86 56888899****************9.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.35E-10	33	88	No hit	No description
PROSITE profile	PS50888	14.208	36	85	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-12	39	106	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.22E-13	41	111	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.6E-8	41	86	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-9	42	91	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MEFNKENDIE KQQESQDEGR EDELKMNYFH SLHNVRESNS RNTTRQWRRE QVDKRIKALR 60 ELIPGCDKVD QASILDDAIK YIQALQQLHR ITSMRMGLMS QEADMSQAGM MLMPQMEPTN 120 GIMANQTVIP PFALPTSSSL SGLQMVPQFQ APFCPQFLQS TAYIMPLSPS FFTAPSPTMT 180 QGRTIRDSSA SNPGVDLLRE YEEAIDYNNS NQGLFFSFPM LQINYDIIIL TLPFSASMNI 240 VFLVTFD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009758957.1	0.0	PREDICTED: transcription factor PIF1-like isoform X1
TrEMBL	A0A1U7USA9	0.0	A0A1U7USA9_NICSY; transcription factor PIF1-like isoform X1
STRING	XP_009758957.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA19915	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	2e-13	phytochrome interacting factor 3