PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009758959.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 230aa    MW: 25939 Da    PI: 4.6263
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009758959.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.34.4e-114086455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    + n   + RR+++ +++  Lrel+P +      K++ a+iL  A++YI+ Lq
  XP_009758959.1 40 SRNTTRQWRREQVDKRIKALRELIPGC-----DKVDQASILDDAIKYIQALQ 86
                    56888899******************9.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.76E-103388No hitNo description
PROSITE profilePS5088814.2083685IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-1239106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-84186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.01E-1341111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-94291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MEFNKENDIE KQQESQDEGR EDELKMNYFH SLHNVRESNS RNTTRQWRRE QVDKRIKALR  60
ELIPGCDKVD QASILDDAIK YIQALQQLHR ITSMRMGLMS QEADMSQAGM MLMPQMEPTN  120
GIMANQTVIP PFALPTSSSL SGLQMVPQFQ APFCPQFLQS TAYIMPLSPS FFTAPSPTMT  180
QGRTIRDSSA SNPGVDLLRE YEEAIDYNNS NQGVQGESSN SASDSTTEKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009758959.11e-172PREDICTED: transcription factor PIF1-like isoform X3
TrEMBLA0A1U7V9K41e-171A0A1U7V9K4_NICSY; transcription factor PIF1-like isoform X3
STRINGXP_009758957.11e-159(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.19e-14phytochrome interacting factor 3-like 5