PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009758960.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 224aa MW: 25376.8 Da PI: 4.2692

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009758960.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.2	3.9e-05	42	63	34	55
TTS-STCHHHHHHHHHHHHHHH CS HLH 34 pskKlsKaeiLekAveYIksLq 55 + ++++ a+iL A++YI+ Lq XP_009758960.1 42 NTTRVDQASILDDAIKYIQALQ 63 56789****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.77E-4	38	65	No hit	No description
SuperFamily	SSF47459	3.14E-6	40	88	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.8E-4	45	72	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MEFNKENDIE KQQESQDEGR EDELKMNYFH SLHNVRESNS RNTTRVDQAS ILDDAIKYIQ 60 ALQQLHRITS MRMGLMSQEA DMSQAGMMLM PQMEPTNGIM ANQTVIPPFA LPTSSSLSGL 120 QMVPQFQAPF CPQFLQSTAY IMPLSPSFFT APSPTMTQGR TIRDSSASNP GVDLLREYEE 180 AIDYNNSNQG LFFSFPMLQI NYDIIILTLP FSASMNIVFL VTFD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009758960.1	1e-165	PREDICTED: uncharacterized protein LOC104211577 isoform X4
Refseq	XP_016469364.1	1e-165	PREDICTED: uncharacterized protein LOC107791615 isoform X3
TrEMBL	A0A1S3ZYF7	1e-164	A0A1S3ZYF7_TOBAC; uncharacterized protein LOC107791615 isoform X3
TrEMBL	A0A1U7VAU4	1e-164	A0A1U7VAU4_NICSY; uncharacterized protein LOC104211577 isoform X4
STRING	XP_009758957.1	1e-159	(Nicotiana sylvestris)