PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009758961.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 216aa    MW: 24477.5 Da    PI: 5.9167
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009758961.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.31.8e-1015551055
                    HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    + RR+++ +++  Lrel+P +      K++ a+iL  A++YI+ Lq
  XP_009758961.1 15 QWRREQVDKRIKALRELIPGC-----DKVDQASILDDAIKYIQALQ 55
                    78******************9.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.576554IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.91E-101057No hitNo description
SMARTSM003531.4E-101160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-71555IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-131581IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-111575IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MTYLLLLFLR KQKKQWRREQ VDKRIKALRE LIPGCDKVDQ ASILDDAIKY IQALQQLHRI  60
TSMRMGLMSQ EADMSQAGMM LMPQMEPTNG IMANQTVIPP FALPTSSSLS GLQMVPQFQA  120
PFCPQFLQST AYIMPLSPSF FTAPSPTMTQ GRTIRDSSAS NPGVDLLREY EEAIDYNNSN  180
QGLFFSFPML QINYDIIILT LPFSASMNIV FLVTFD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009758961.11e-158PREDICTED: transcription factor APG-like isoform X5
TrEMBLA0A1U7V1X41e-157A0A1U7V1X4_NICSY; transcription factor APG-like isoform X5
STRINGXP_009758957.11e-148(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.26e-10phytochrome interacting factor 3