PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009759481.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Trihelix

Protein Properties

Length: 366aa MW: 42295.6 Da PI: 6.5152

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009759481.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	72.1	9.7e-23	114	202	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk..lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcpyfdqle 86 +Wt+++v++Li+a+++++e++ ++ kk++W+++s +m+erg ++sp+qC++k++++nk++k+++++ +++t + ++++ ++++ ++ XP_009759481.1 114 KWTDDMVKLLITAVSYIGEDVLSNGvfIKKGKWRAISCVMAERGHHISPQQCEDKFNDMNKKFKRLNDILGRGTaCHVVENPALLEMMD 202 7*****************998654589******************************************5488888888888775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	5.9E-20	112	227	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MVYQIAAGIN TFLDRASTAC AFHRSRLVSG ELELFSSMQV NHPNQGPVVL GQHAPEVMSF 60 GVSNMEDIDQ EMQLLDSIKL NSVEMPEAYH EGMNDVTEVS GHAEEKQPVY HRMKWTDDMV 120 KLLITAVSYI GEDVLSNGVF IKKGKWRAIS CVMAERGHHI SPQQCEDKFN DMNKKFKRLN 180 DILGRGTACH VVENPALLEM MDLSDNLKEE MKKLLGSKQL FYQEMCSYNN QNRLFLPHDQ 240 EVQQSVLLAV KGKDKCDTKN VLQDLPLKRK TSGEERVSKD KRVSMNNEER EIQDEHSLPR 300 LRQLEEQKLQ IQAQILELEK KRFKHMRFCS KEDKELQKMM LDNEVIKLEN QRLVLELKLS 360 GMRPFD

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MVYQIAAGIN TFLDRASTAC AFHRSRLVSG ELELFSSMQV NHPNQGPVVL GQHAPEVMSF  60
GVSNMEDIDQ EMQLLDSIKL NSVEMPEAYH EGMNDVTEVS GHAEEKQPVY HRMKWTDDMV  120
KLLITAVSYI GEDVLSNGVF IKKGKWRAIS CVMAERGHHI SPQQCEDKFN DMNKKFKRLN  180
DILGRGTACH VVENPALLEM MDLSDNLKEE MKKLLGSKQL FYQEMCSYNN QNRLFLPHDQ  240
EVQQSVLLAV KGKDKCDTKN VLQDLPLKRK TSGEERVSKD KRVSMNNEER EIQDEHSLPR  300
LRQLEEQKLQ IQAQILELEK KRFKHMRFCS KEDKELQKMM LDNEVIKLEN QRLVLELKLS  360
GMRPFD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009759481.1	0.0	PREDICTED: uncharacterized protein LOC104212013 isoform X1
TrEMBL	A0A1U7V3F1	0.0	A0A1U7V3F1_NICSY; uncharacterized protein LOC104212013 isoform X1
STRING	XP_009759481.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12585	16	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76870.1	8e-72