PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009759482.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Trihelix

Protein Properties

Length: 364aa MW: 42052.3 Da PI: 6.3825

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009759482.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	72.1	9.6e-23	112	200	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk..lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcpyfdqle 86 +Wt+++v++Li+a+++++e++ ++ kk++W+++s +m+erg ++sp+qC++k++++nk++k+++++ +++t + ++++ ++++ ++ XP_009759482.1 112 KWTDDMVKLLITAVSYIGEDVLSNGvfIKKGKWRAISCVMAERGHHISPQQCEDKFNDMNKKFKRLNDILGRGTaCHVVENPALLEMMD 200 7*****************998654589******************************************5488888888888775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	5.8E-20	110	225	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
MVYQIAAGIN TFLDRASTAC AFHRLVSGEL ELFSSMQVNH PNQGPVVLGQ HAPEVMSFGV 60 SNMEDIDQEM QLLDSIKLNS VEMPEAYHEG MNDVTEVSGH AEEKQPVYHR MKWTDDMVKL 120 LITAVSYIGE DVLSNGVFIK KGKWRAISCV MAERGHHISP QQCEDKFNDM NKKFKRLNDI 180 LGRGTACHVV ENPALLEMMD LSDNLKEEMK KLLGSKQLFY QEMCSYNNQN RLFLPHDQEV 240 QQSVLLAVKG KDKCDTKNVL QDLPLKRKTS GEERVSKDKR VSMNNEEREI QDEHSLPRLR 300 QLEEQKLQIQ AQILELEKKR FKHMRFCSKE DKELQKMMLD NEVIKLENQR LVLELKLSGM 360 RPFD

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

MVYQIAAGIN TFLDRASTAC AFHRLVSGEL ELFSSMQVNH PNQGPVVLGQ HAPEVMSFGV  60
SNMEDIDQEM QLLDSIKLNS VEMPEAYHEG MNDVTEVSGH AEEKQPVYHR MKWTDDMVKL  120
LITAVSYIGE DVLSNGVFIK KGKWRAISCV MAERGHHISP QQCEDKFNDM NKKFKRLNDI  180
LGRGTACHVV ENPALLEMMD LSDNLKEEMK KLLGSKQLFY QEMCSYNNQN RLFLPHDQEV  240
QQSVLLAVKG KDKCDTKNVL QDLPLKRKTS GEERVSKDKR VSMNNEEREI QDEHSLPRLR  300
QLEEQKLQIQ AQILELEKKR FKHMRFCSKE DKELQKMMLD NEVIKLENQR LVLELKLSGM  360
RPFD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009759482.1	0.0	PREDICTED: uncharacterized protein LOC104212013 isoform X2
TrEMBL	A0A1U7UTV7	0.0	A0A1U7UTV7_NICSY; uncharacterized protein LOC104212013 isoform X2
STRING	XP_009759481.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76870.1	1e-71