PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009759846.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 223aa    MW: 24630.1 Da    PI: 4.4434
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009759846.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.9e-182171155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    s+y+GVr +k +g+Wv+e+r p++   r r++lg+++tae+Aa+a +aa  +l+g
  XP_009759846.1 21 SKYRGVRKRK-WGKWVSEVRLPNS---RERIWLGSYDTAEKAARAFDAALFCLRG 71
                    89*****999.*******999833...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-212180IPR016177DNA-binding domain
PfamPF008471.6E-112171IPR001471AP2/ERF domain
CDDcd000181.89E-292281No hitNo description
Gene3DG3DSA:3.30.730.108.6E-302280IPR001471AP2/ERF domain
PROSITE profilePS5103222.3392279IPR001471AP2/ERF domain
SMARTSM003801.2E-322285IPR001471AP2/ERF domain
PRINTSPR003671.5E-102334IPR001471AP2/ERF domain
PRINTSPR003671.5E-104561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MVKPNGKDSC ENSPSSSSSS SKYRGVRKRK WGKWVSEVRL PNSRERIWLG SYDTAEKAAR  60
AFDAALFCLR GKTANFNFPE NPPEILNGRS MTPAEIQVAA AQFANSDSDP RVGNWVNPRE  120
NSDPSSSSSE MFCAESPSVS VSNGLAGLES EKTEMTLDNG FVDMFSSMGT TNDMSNFGIF  180
PGFDDLSGEY YVPPLPNLDN TAEENYMNYD GFHLQGSSFL WNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-171780973Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00151DAPTransfer from AT1G19210Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009759846.11e-164PREDICTED: ethylene-responsive transcription factor ERF017
RefseqXP_016496753.11e-164PREDICTED: ethylene-responsive transcription factor ERF017-like
SwissprotQ84QC22e-58ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A1S4C6K11e-163A0A1S4C6K1_TOBAC; ethylene-responsive transcription factor ERF017-like
TrEMBLA0A1U7V4E61e-163A0A1U7V4E6_NICSY; ethylene-responsive transcription factor ERF017
STRINGXP_009759846.11e-163(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19392466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.12e-58ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]