PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009760064.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 322aa MW: 36243.8 Da PI: 9.2444

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009760064.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	175.6	1.4e-54	12	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL +k+++ +++ ++i++vd++k+ePwdLp k+k e kewyfFs rd+ky+tg r+nrat++gyWk+tgkdke++++ XP_009760064.1 12 LPPGFRFHPTDEELITYYLVNKISDASFTG-RAIADVDLNKSEPWDLPGKAKMEGKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNS 105 79***********************999.89***********9999999**********************************98 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++elvg+kktLvfykgrap+gek++Wvmheyr+ XP_009760064.1 106 kTSELVGMKKTLVFYKGRAPRGEKSNWVMHEYRI 139 67888*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.03E-63	6	161	IPR003441	NAC domain
PROSITE profile	PS51005	61.259	12	161	IPR003441	NAC domain
Pfam	PF02365	9.5E-29	13	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MELKVNKEES SLPPGFRFHP TDEELITYYL VNKISDASFT GRAIADVDLN KSEPWDLPGK 60 AKMEGKEWYF FSLRDRKYPT GVRTNRATNT GYWKTTGKDK EIFNSKTSEL VGMKKTLVFY 120 KGRAPRGEKS NWVMHEYRIR SKSSYRTNKQ DEWVVCRIFQ KSAGMKKYPT NHSRTIVNPY 180 SLEINQNAIS SQMMMQPDHG FQFAMGRNYI NHASNYMNNF PIQHQMNYNI GGSSSGGGGG 240 GGDNFFTISG LNLNLGGGAA ASSQPVLRPM PPPPPPPQVM NIQHEVTSSM LDNCAITSEA 300 GYGAEMNSAH YCADLDNYWA TY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-54	11	167	16	171	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-54	11	167	16	171	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-54	11	167	16	171	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-54	11	167	16	171	NO APICAL MERISTEM PROTEIN
3swm_A	4e-54	9	167	17	174	NAC domain-containing protein 19
3swm_B	4e-54	9	167	17	174	NAC domain-containing protein 19
3swm_C	4e-54	9	167	17	174	NAC domain-containing protein 19
3swm_D	4e-54	9	167	17	174	NAC domain-containing protein 19
3swp_A	4e-54	9	167	17	174	NAC domain-containing protein 19
3swp_B	4e-54	9	167	17	174	NAC domain-containing protein 19
3swp_C	4e-54	9	167	17	174	NAC domain-containing protein 19
3swp_D	4e-54	9	167	17	174	NAC domain-containing protein 19
4dul_A	3e-54	11	167	16	171	NAC domain-containing protein 19
4dul_B	3e-54	11	167	16	171	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00277	DAP	Transfer from AT2G24430	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF510216	1e-142	AF510216.1 Petunia x hybrida nam-like protein 19 (NH19) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009760064.1	0.0	PREDICTED: NAC domain-containing protein 77-like
TrEMBL	A0A1U7VCP2	0.0	A0A1U7VCP2_NICSY; NAC domain-containing protein 77-like
STRING	XP_009760064.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24430.2	1e-105	NAC domain containing protein 38