PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009760921.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 332aa    MW: 36158.3 Da    PI: 4.9132
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009760921.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.63e-36251162102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d++++elisw+e+g++f+v+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++g+k ll++
  XP_009760921.1  25 FLTKTYQLVDDPAIDELISWNEDGTTFIVWKPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANDCFRRGEKGLLRD 110
                     9*****************************************************************99.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+k 
  XP_009760921.1 111 IQRRKI 116
                     ***985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.0E-3816108IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.2E-5821114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467856.73E-3622114IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000568.0E-212548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.2E-3225114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.0E-216375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.0E-217688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.20.5.1702.1E-4186211No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MVPSPFEQTG ESTAGENQKS LPTPFLTKTY QLVDDPAIDE LISWNEDGTT FIVWKPAEFA  60
RDLLPKYFKH NNFSSFVRQL NTYGFRKVVP DRWEFANDCF RRGEKGLLRD IQRRKISPAG  120
TAVTAVSPTV AVNATQAVTI AVAPAVRLVS PSNSGDEQVL SSNSSPAATA AAVAVLRTTT  180
CTTTPELLEE NERLRKENAQ LSQELNRLRS LCNNVYNLMS NYTGNPSETL AGIPDGRALE  240
LLPAGQVAAD MDGGATATPA ECSGVKAEED ISPRLFGVSI GVKRVRRSSE EESEREGRVQ  300
DQVQLHGSDV KSEPLDSGSG HHDGQPWIDR LG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-272511429129Heat shock factor protein 1
5d5v_B5e-272511429129Heat shock factor protein 1
5d5v_D5e-272511429129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00432DAPTransfer from AT4G11660Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009760921.10.0PREDICTED: heat stress transcription factor B-2b
RefseqXP_016444574.10.0PREDICTED: heat stress transcription factor B-2b-like isoform X1
SwissprotQ9T0D31e-109HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLA0A1S3XXH50.0A0A1S3XXH5_TOBAC; heat stress transcription factor B-2b-like isoform X1
TrEMBLA0A1U7V7G90.0A0A1U7V7G9_NICSY; heat stress transcription factor B-2b
STRINGXP_009760921.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21822460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.17e-91HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]