PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009760930.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 1088aa    MW: 123346 Da    PI: 9.515
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009760930.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3376.2e-1227116198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffk+    + ++++rl++p +fa+++ ++  ++  + le ++g++Wev++    ++g++ l+ GW++F +   +  g f++F ++ rs f  +v+
  XP_009760930.1  27 FFKII--LSQHERSRLRIPEDFASRYCKNMLNP--VYLEVPTGEVWEVEV--VHSQGQICLGIGWQDFSDFYSISCGHFLMFGYNARSHF--NVT 113
                     67777..78889999***********5454444..***************..999999**************************999999..999 PP

                     EE- CS
              B3  96 vfr 98 
                     +f+
  XP_009760930.1 114 IFD 116
                     987 PP
2B340.54.7e-13280360490
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                      + ps+v++  +l+++ kfa+++ +++ +   l+l+ +   sW+vk+++  +  +++    Wk Fv +n+Lk gD++vF++++  + 
  XP_009760930.1 280 FMQPSYVFSPFNLSMSLKFARKYFLENYR--NLVLRVPGRGSWSVKCTFGTTNAKIF----WKAFVMDNKLKPGDVCVFEVIKGAKL 360
                     5789*******************887545..7***************8866655554....*******************8764433 PP
3B3474.5e-15538627497
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                      + ps+v+k  +l ++ +f++++  ++ +    +l+ +   sW+v++    + ++  +++GWk Fv +n+Lk gD++vF++++ ++  + v++f
  XP_009760930.1 538 FMQPSYVSKPYNLNISATFIRKYFRDEYS--NFVLRVPGRGSWSVEC--FMGTSKAQIRSGWKAFVLDNKLKHGDVCVFEVIKVTKLLMDVTIF 627
                     6789*******************777555..69**************..334444559**********************99877776777776 PP
4B334.73.2e-11794882799
                     .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     ps+v++  rl +    a+++  + +++  l+l  +   sW+vk+   k++ ++ +   Wk Fv +n+Lk gD++vF+l++ ++  l v++fr+
  XP_009760930.1 794 PSYVSTPYRLDITFLLARKYLWE-KCG-FLVLHVPGRGSWSVKYVLGKSKTKICFY--WKAFVLDNKLKFGDVCVFELIKGTKPILDVTIFRT 882
                     66666666666666666666322.233.588899999*******999999999999..*********************88777788888885 PP
5B349.67.2e-169931079794
                      .-HHHHT...T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3    7 psdvlks...grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94  
                      ps+v++     +l++  + a+++   k++  +++l+++s rsW vk+  + +     lt+GWkeFv +n+Lkeg ++vF++++rs+  ++v
  XP_009760930.1  993 PSYVSSAsgpMQLSITLPIARKFFATKHS--DVILQNSSKRSWAVKC--SLGTVNAKLTSGWKEFVLDNDLKEGHICVFERVSRSKLLFNV 1079
                      44444445567899999999999766444..8***************..55555677***********************88776664444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.9E-1819118IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-1721118IPR015300DNA-binding pseudobarrel domain
CDDcd100171.08E-1025116No hitNo description
PROSITE profilePS5086311.16625118IPR003340B3 DNA binding domain
PfamPF023621.9E-827116IPR003340B3 DNA binding domain
SMARTSM010192.6E-828118IPR003340B3 DNA binding domain
SuperFamilySSF1019367.65E-15270361IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.0E-16270364IPR015300DNA-binding pseudobarrel domain
CDDcd100174.88E-15275368No hitNo description
SMARTSM010192.8E-9276370IPR003340B3 DNA binding domain
PROSITE profilePS508639.305277370IPR003340B3 DNA binding domain
PfamPF023621.8E-10279359IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.2E-21527630IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-19528628IPR015300DNA-binding pseudobarrel domain
CDDcd100174.56E-15533628No hitNo description
SMARTSM010196.8E-11534630IPR003340B3 DNA binding domain
PROSITE profilePS5086311.773535630IPR003340B3 DNA binding domain
PfamPF023626.1E-12537627IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.6E-16780881IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.61E-16781881IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.123788883IPR003340B3 DNA binding domain
SMARTSM010191.8E-6791883IPR003340B3 DNA binding domain
CDDcd100175.85E-13792881No hitNo description
PfamPF023621.6E-8794881IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.6E-229791083IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.37E-189821083IPR015300DNA-binding pseudobarrel domain
CDDcd100172.16E-149851082No hitNo description
PROSITE profilePS5086312.4789901085IPR003340B3 DNA binding domain
SMARTSM010196.9E-99901085IPR003340B3 DNA binding domain
PfamPF023629.0E-149971081IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1088 aa     Download sequence    Send to blast
MAAKPQLQNG EGSSHWKSST NITQPKFFKI ILSQHERSRL RIPEDFASRY CKNMLNPVYL  60
EVPTGEVWEV EVVHSQGQIC LGIGWQDFSD FYSISCGHFL MFGYNARSHF NVTIFDLSAS  120
EIEYPYSSAH GIHTPISYSH ETRHAPERDQ SESDDSVEIL EGIPRSQKAN PIIPDMVENS  180
VENLDHCPLG QSSKRQRQEG DTEDDVFVDM HIKRMKVEKL QEDVASFTRE GQKSSEGCCT  240
HMLQSKIVYD ENKTVMDKER AIAYQRAKGF KSKNPFVISF MQPSYVFSPF NLSMSLKFAR  300
KYFLENYRNL VLRVPGRGSW SVKCTFGTTN AKIFWKAFVM DNKLKPGDVC VFEVIKGAKL  360
LMDITIFPAA GSTPMHKIAG EVPWVSDKSV PFSQSRIVQT KNLKQRRGGV CGFNSKVKAE  420
HGEGIGIEHS FEILGHCPLG QYRKITRLER DAEDDVPFDT HTKNIKVETS QEDVALPSFR  480
KTKNFEFLFE ESGESCRMHT QQTTIVCGKN KTVMDKERAM AYQRAKAFKS KNPFIISFMQ  540
PSYVSKPYNL NISATFIRKY FRDEYSNFVL RVPGRGSWSV ECFMGTSKAQ IRSGWKAFVL  600
DNKLKHGDVC VFEVIKVTKL LMDVTIFPAT GSTPMLKIAG EVTGVSDSKR KIIKTDIYVP  660
CSPPKVVHTN RLKQRRGEEH DEGTGIESSV EILGHCPLGH DSKIKRLEVE TEDDVSIDIH  720
AKNIKVANTQ EDVASPSFTR KTKKSGESCR MDKQQSKMVY DKNTTVLDKE RTVAYQRAKD  780
FKSENPYVMY FMQPSYVSTP YRLDITFLLA RKYLWEKCGF LVLHVPGRGS WSVKYVLGKS  840
KTKICFYWKA FVLDNKLKFG DVCVFELIKG TKPILDVTIF RTAESKPVHK IDGKLSGVSD  900
CKNKTIKTEN SVPCSQSKIV RSRKLNLEKR QNGNSDGFTS KTKEELSEDA GKHVQQSKSS  960
CKGSAVAKEM VLAYQRAKAF TSENPFFICF MQPSYVSSAS GPMQLSITLP IARKFFATKH  1020
SDVILQNSSK RSWAVKCSLG TVNAKLTSGW KEFVLDNDLK EGHICVFERV SRSKLLFNVI  1080
IFTSAEGM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-1550862722140B3 domain-containing transcription factor VRN1
4i1k_B1e-1550862722140B3 domain-containing transcription factor VRN1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009760930.10.0PREDICTED: uncharacterized protein LOC104213184 isoform X3
TrEMBLA0A1U7VGF60.0A0A1U7VGF6_NICSY; uncharacterized protein LOC104213184 isoform X3
STRINGXP_009760928.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.17e-32B3 family protein