PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009760932.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 1064aa    MW: 120844 Da    PI: 9.1308
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009760932.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.23.9e-107851498
                    T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                      +++p +fa+++ ++  ++  + le ++g++Wev++    ++g++ l+ GW++F +   +  g f++F ++ rs f  +v++f+
  XP_009760932.1  7 FSMRIPEDFASRYCKNMLNP--VYLEVPTGEVWEVEV--VHSQGQICLGIGWQDFSDFYSISCGHFLMFGYNARSHF--NVTIFD 85
                    5699*********5454444..***************..999999**************************999999..999987 PP
2B340.64.6e-13249329490
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                      + ps+v++  +l+++ kfa+++ +++ +   l+l+ +   sW+vk+++  +  +++    Wk Fv +n+Lk gD++vF++++  + 
  XP_009760932.1 249 FMQPSYVFSPFNLSMSLKFARKYFLENYR--NLVLRVPGRGSWSVKCTFGTTNAKIF----WKAFVMDNKLKPGDVCVFEVIKGAKL 329
                     5789*******************887545..7***************8866655554....*******************8764433 PP
3B347.14.3e-15507596497
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                      + ps+v+k  +l ++ +f++++  ++ +    +l+ +   sW+v++    + ++  +++GWk Fv +n+Lk gD++vF++++ ++  + v++f
  XP_009760932.1 507 FMQPSYVSKPYNLNISATFIRKYFRDEYS--NFVLRVPGRGSWSVEC--FMGTSKAQIRSGWKAFVLDNKLKHGDVCVFEVIKVTKLLMDVTIF 596
                     6789*******************777555..69**************..334444559**********************99877776777776 PP
4B334.83e-11770858799
                     .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     ps+v++  rl +    a+++  + +++  l+l  +   sW+vk+   k++ ++ +   Wk Fv +n+Lk gD++vF+l++ ++  l v++fr+
  XP_009760932.1 770 PSYVSTPYRLDITFLLARKYLWE-KCG-FLVLHVPGRGSWSVKYVLGKSKTKICFY--WKAFVLDNKLKFGDVCVFELIKGTKPILDVTIFRT 858
                     66666666666666667666322.233.588899999*******999999999999..*********************88777788888885 PP
5B349.67e-169691055794
                      .-HHHHT...T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3    7 psdvlks...grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94  
                      ps+v++     +l++  + a+++   k++  +++l+++s rsW vk+  + +     lt+GWkeFv +n+Lkeg ++vF++++rs+  ++v
  XP_009760932.1  969 PSYVSSAsgpMQLSITLPIARKFFATKHS--DVILQNSSKRSWAVKC--SLGTVNAKLTSGWKEFVLDNDLKEGHICVFERVSRSKLLFNV 1055
                      44444445567899999999999766444..8***************..55555677***********************88776664444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.491187IPR003340B3 DNA binding domain
SMARTSM010190.0072187IPR003340B3 DNA binding domain
CDDcd100171.06E-8485No hitNo description
Gene3DG3DSA:2.40.330.101.7E-14787IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-14787IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-15239330IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.8E-16239333IPR015300DNA-binding pseudobarrel domain
CDDcd100174.91E-15244337No hitNo description
SMARTSM010192.8E-9245339IPR003340B3 DNA binding domain
PROSITE profilePS508639.305246339IPR003340B3 DNA binding domain
PfamPF023621.7E-10248328IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.1E-21496599IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.47E-19497597IPR015300DNA-binding pseudobarrel domain
CDDcd100174.64E-15502597No hitNo description
SMARTSM010196.8E-11503599IPR003340B3 DNA binding domain
PROSITE profilePS5086311.773504599IPR003340B3 DNA binding domain
PfamPF023625.9E-12506596IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.5E-16756857IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-16757857IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.123764859IPR003340B3 DNA binding domain
SMARTSM010191.8E-6767859IPR003340B3 DNA binding domain
CDDcd100175.95E-13768857No hitNo description
PfamPF023621.6E-8770857IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.5E-229551059IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.33E-189581059IPR015300DNA-binding pseudobarrel domain
CDDcd100172.29E-149611058No hitNo description
SMARTSM010196.9E-99661061IPR003340B3 DNA binding domain
PROSITE profilePS5086312.4789661061IPR003340B3 DNA binding domain
PfamPF023628.7E-149731057IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1064 aa     Download sequence    Send to blast
MQQYSDFSMR IPEDFASRYC KNMLNPVYLE VPTGEVWEVE VVHSQGQICL GIGWQDFSDF  60
YSISCGHFLM FGYNARSHFN VTIFDLSASE IEYPYSSAHG IHTPISYSHE TRHAPERDQS  120
ESDDSVEILE GIPRSQKANP IIPDMVENSV ENLDHCPLGQ SSKRQRQEGD TEDDVFVDMH  180
IKRMKVEKLQ EDVASFTREG QKSSEGCCTH MLQSKIVYDE NKTVMDKERA IAYQRAKGFK  240
SKNPFVISFM QPSYVFSPFN LSMSLKFARK YFLENYRNLV LRVPGRGSWS VKCTFGTTNA  300
KIFWKAFVMD NKLKPGDVCV FEVIKGAKLL MDITIFPAAG STPMHKIAGE VPWVSDKSVP  360
FSQSRIVQTK NLKQRRGGVC GFNSKVKAEH GEGIGIEHSF EILGHCPLGQ YRKITRLERD  420
AEDDVPFDTH TKNIKVETSQ EDVALPSFRK TKNFEFLFEE SGESCRMHTQ QTTIVCGKNK  480
TVMDKERAMA YQRAKAFKSK NPFIISFMQP SYVSKPYNLN ISATFIRKYF RDEYSNFVLR  540
VPGRGSWSVE CFMGTSKAQI RSGWKAFVLD NKLKHGDVCV FEVIKVTKLL MDVTIFPATG  600
STPMLKIAGE VTGVSDSKRK IIKTDIYVPC SPPKVVHTNR LKQRRGEEHD EGTGIESSVE  660
ILGHCPLGHD SKIKRLEVET EDDVSIDIHA KNIKVANTQE DVASPSFTRK TKNFEFLYEE  720
SGESCRMDKQ QSKMVYDKNT TVLDKERTVA YQRAKDFKSE NPYVMYFMQP SYVSTPYRLD  780
ITFLLARKYL WEKCGFLVLH VPGRGSWSVK YVLGKSKTKI CFYWKAFVLD NKLKFGDVCV  840
FELIKGTKPI LDVTIFRTAE SKPVHKIDGK LSGVSDCKNK TIKTENSVPC SQSKIVRSRK  900
LNLEKRQNGN SDGFTSKTKE ELSEDAGKHV QQSKSSCKGS AVAKEMVLAY QRAKAFTSEN  960
PFFICFMQPS YVSSASGPMQ LSITLPIARK FFATKHSDVI LQNSSKRSWA VKCSLGTVNA  1020
KLTSGWKEFV LDNDLKEGHI CVFERVSRSK LLFNVIIFTS AEGM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-1547759622140B3 domain-containing transcription factor VRN1
4i1k_B1e-1547759622140B3 domain-containing transcription factor VRN1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009760932.10.0PREDICTED: uncharacterized protein LOC104213184 isoform X5
TrEMBLA0A1U7UY210.0A0A1U7UY21_NICSY; uncharacterized protein LOC104213184 isoform X5
STRINGXP_009760928.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-29B3 family protein