PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009760933.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 1042aa    MW: 118145 Da    PI: 9.181
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009760933.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.64.5e-13227307490
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                      + ps+v++  +l+++ kfa+++ +++ +   l+l+ +   sW+vk+++  +  +++    Wk Fv +n+Lk gD++vF++++  + 
  XP_009760933.1 227 FMQPSYVFSPFNLSMSLKFARKYFLENYR--NLVLRVPGRGSWSVKCTFGTTNAKIF----WKAFVMDNKLKPGDVCVFEVIKGAKL 307
                     5789*******************887545..7***************8866655554....*******************8764433 PP
2B347.14.2e-15485574497
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                      + ps+v+k  +l ++ +f++++  ++ +    +l+ +   sW+v++    + ++  +++GWk Fv +n+Lk gD++vF++++ ++  + v++f
  XP_009760933.1 485 FMQPSYVSKPYNLNISATFIRKYFRDEYS--NFVLRVPGRGSWSVEC--FMGTSKAQIRSGWKAFVLDNKLKHGDVCVFEVIKVTKLLMDVTIF 574
                     6789*******************777555..69**************..334444559**********************99877776777776 PP
3B334.82.9e-11748836799
                     .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     ps+v++  rl +    a+++  + +++  l+l  +   sW+vk+   k++ ++ +   Wk Fv +n+Lk gD++vF+l++ ++  l v++fr+
  XP_009760933.1 748 PSYVSTPYRLDITFLLARKYLWE-KCG-FLVLHVPGRGSWSVKYVLGKSKTKICFY--WKAFVLDNKLKFGDVCVFELIKGTKPILDVTIFRT 836
                     66666666666666667666322.233.588899999*******999999999999..*********************88777788888885 PP
4B349.76.8e-169471033794
                      .-HHHHT...T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3    7 psdvlks...grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94  
                      ps+v++     +l++  + a+++   k++  +++l+++s rsW vk+  + +     lt+GWkeFv +n+Lkeg ++vF++++rs+  ++v
  XP_009760933.1  947 PSYVSSAsgpMQLSITLPIARKFFATKHS--DVILQNSSKRSWAVKC--SLGTVNAKLTSGWKEFVLDNDLKEGHICVFERVSRSKLLFNV 1033
                      44444445567899999999999766444..8***************..55555677***********************88776664444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.771165IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.9E-11576IPR015300DNA-binding pseudobarrel domain
CDDcd100177.91E-6563No hitNo description
SuperFamilySSF1019364.71E-10565IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.6E-16217311IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.26E-15217308IPR015300DNA-binding pseudobarrel domain
CDDcd100174.95E-15222315No hitNo description
SMARTSM010192.8E-9223317IPR003340B3 DNA binding domain
PROSITE profilePS508639.305224317IPR003340B3 DNA binding domain
PfamPF023621.7E-10226306IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.0E-21474577IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-19475575IPR015300DNA-binding pseudobarrel domain
CDDcd100174.68E-15480575No hitNo description
SMARTSM010196.8E-11481577IPR003340B3 DNA binding domain
PROSITE profilePS5086311.773482577IPR003340B3 DNA binding domain
PfamPF023625.8E-12484574IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.4E-16734835IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.53E-16735835IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.123742837IPR003340B3 DNA binding domain
SMARTSM010191.8E-6745837IPR003340B3 DNA binding domain
CDDcd100175.89E-13746835No hitNo description
PfamPF023621.5E-8748835IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-229331037IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.29E-189361037IPR015300DNA-binding pseudobarrel domain
CDDcd100172.33E-149391036No hitNo description
SMARTSM010196.9E-99441039IPR003340B3 DNA binding domain
PROSITE profilePS5086312.4789441039IPR003340B3 DNA binding domain
PfamPF023628.5E-149511035IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1042 aa     Download sequence    Send to blast
MLNPVYLEVP TGEVWEVEVV HSQGQICLGI GWQDFSDFYS ISCGHFLMFG YNARSHFNVT  60
IFDLSASEIE YPYSSAHGIH TPISYSHETR HAPERDQSES DDSVEILEGI PRSQKANPII  120
PDMVENSVEN LDHCPLGQSS KRQRQEGDTE DDVFVDMHIK RMKVEKLQED VASFTREGQK  180
SSEGCCTHML QSKIVYDENK TVMDKERAIA YQRAKGFKSK NPFVISFMQP SYVFSPFNLS  240
MSLKFARKYF LENYRNLVLR VPGRGSWSVK CTFGTTNAKI FWKAFVMDNK LKPGDVCVFE  300
VIKGAKLLMD ITIFPAAGST PMHKIAGEVP WVSDKSVPFS QSRIVQTKNL KQRRGGVCGF  360
NSKVKAEHGE GIGIEHSFEI LGHCPLGQYR KITRLERDAE DDVPFDTHTK NIKVETSQED  420
VALPSFRKTK NFEFLFEESG ESCRMHTQQT TIVCGKNKTV MDKERAMAYQ RAKAFKSKNP  480
FIISFMQPSY VSKPYNLNIS ATFIRKYFRD EYSNFVLRVP GRGSWSVECF MGTSKAQIRS  540
GWKAFVLDNK LKHGDVCVFE VIKVTKLLMD VTIFPATGST PMLKIAGEVT GVSDSKRKII  600
KTDIYVPCSP PKVVHTNRLK QRRGEEHDEG TGIESSVEIL GHCPLGHDSK IKRLEVETED  660
DVSIDIHAKN IKVANTQEDV ASPSFTRKTK NFEFLYEESG ESCRMDKQQS KMVYDKNTTV  720
LDKERTVAYQ RAKDFKSENP YVMYFMQPSY VSTPYRLDIT FLLARKYLWE KCGFLVLHVP  780
GRGSWSVKYV LGKSKTKICF YWKAFVLDNK LKFGDVCVFE LIKGTKPILD VTIFRTAESK  840
PVHKIDGKLS GVSDCKNKTI KTENSVPCSQ SKIVRSRKLN LEKRQNGNSD GFTSKTKEEL  900
SEDAGKHVQQ SKSSCKGSAV AKEMVLAYQR AKAFTSENPF FICFMQPSYV SSASGPMQLS  960
ITLPIARKFF ATKHSDVILQ NSSKRSWAVK CSLGTVNAKL TSGWKEFVLD NDLKEGHICV  1020
FERVSRSKLL FNVIIFTSAE GM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-1545557422140B3 domain-containing transcription factor VRN1
4i1k_B1e-1545557422140B3 domain-containing transcription factor VRN1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009760932.10.0PREDICTED: uncharacterized protein LOC104213184 isoform X5
TrEMBLA0A1U7UY210.0A0A1U7UY21_NICSY; uncharacterized protein LOC104213184 isoform X5
STRINGXP_009760928.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-26B3 family protein