PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009761017.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 354aa MW: 39789.4 Da PI: 6.2622

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009761017.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.2	3.6e-14	163	209	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr+llP+ +K +Ka+ L ++++++k+L XP_009761017.1 163 KSHSEAERRRRERINNHLAKLRSLLPNT-----TKTDKASLLAEVIQHVKEL 209 79***********************9.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	17.136	160	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-11	163	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.54E-15	164	218	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.4E-15	164	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.6E-13	166	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.22E-5	173	212	No hit	No description
Gene3D	G3DSA:3.30.70.260	1.1E-4	248	318	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MSDRKDQEDQ QGNCSEAINN LQQCIQEQLL LQHHQQSNQE NMQPQSFNIN PVHFPSNSEM 60 SQILPWTLPP VQPFNPVHHH HHVDPFLLPP TPSPYGGLFN RRVPQFAYEG TTSSDHHLRF 120 ISDTLGHVVH HQPAGSAPFG LQAELQKMTA QEIMDAKALA ASKSHSEAER RRRERINNHL 180 AKLRSLLPNT TKTDKASLLA EVIQHVKELK RQTSLIAETN PVPTEIDELT VDNASDEFED 240 GKFVIKASLC CEDRSDLLPD LIKTLKALRL KTLKAEITTL GGRVRNVLFI TGDHNYNQED 300 DLSTSDDLDQ QQQPQYSISS IQEALKAVME KSSGDDSASG SVKRQRTNNI NILS

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MSDRKDQEDQ QGNCSEAINN LQQCIQEQLL LQHHQQSNQE NMQPQSFNIN PVHFPSNSEM  60
SQILPWTLPP VQPFNPVHHH HHVDPFLLPP TPSPYGGLFN RRVPQFAYEG TTSSDHHLRF  120
ISDTLGHVVH HQPAGSAPFG LQAELQKMTA QEIMDAKALA ASKSHSEAER RRRERINNHL  180
AKLRSLLPNT TKTDKASLLA EVIQHVKELK RQTSLIAETN PVPTEIDELT VDNASDEFED  240
GKFVIKASLC CEDRSDLLPD LIKTLKALRL KTLKAEITTL GGRVRNVLFI TGDHNYNQED  300
DLSTSDDLDQ QQQPQYSISS IQEALKAVME KSSGDDSASG SVKRQRTNNI NILS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	168	173	ERRRRE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975517	5e-79	HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009761017.1	0.0	PREDICTED: transcription factor bHLH30-like isoform X1
Swissprot	Q9S7Y1	1e-102	BH030_ARATH; Transcription factor bHLH30
TrEMBL	A0A1U7UYB7	0.0	A0A1U7UYB7_NICSY; transcription factor bHLH30-like isoform X1
STRING	XP_009761017.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4083	24	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	3e-80	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]