PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009761018.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 313aa    MW: 34983.3 Da    PI: 6.6808
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009761018.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.43e-14122168354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L ++++++k+L
  XP_009761018.1 122 KSHSEAERRRRERINNHLAKLRSLLPNT-----TKTDKASLLAEVIQHVKEL 168
                     79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.136119168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-11122168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-15123178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.37E-15123177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-13125174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.51E-5132171No hitNo description
Gene3DG3DSA:3.30.70.2608.9E-5207277No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MQPQSFNINP VHFPSNSEMS QILPWTLPPV QPFNPVHHHH HVDPFLLPPT PSPYGGLFNR  60
RVPQFAYEGT TSSDHHLRFI SDTLGHVVHH QPAGSAPFGL QAELQKMTAQ EIMDAKALAA  120
SKSHSEAERR RRERINNHLA KLRSLLPNTT KTDKASLLAE VIQHVKELKR QTSLIAETNP  180
VPTEIDELTV DNASDEFEDG KFVIKASLCC EDRSDLLPDL IKTLKALRLK TLKAEITTLG  240
GRVRNVLFIT GDHNYNQEDD LSTSDDLDQQ QQPQYSISSI QEALKAVMEK SSGDDSASGS  300
VKRQRTNNIN ILS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127132ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755174e-79HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009761017.10.0PREDICTED: transcription factor bHLH30-like isoform X1
RefseqXP_009761018.10.0PREDICTED: transcription factor bHLH30-like isoform X2
SwissprotQ9S7Y11e-102BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A1U7UYB70.0A0A1U7UYB7_NICSY; transcription factor bHLH30-like isoform X1
TrEMBLA0A1U7V3Q90.0A0A1U7V3Q9_NICSY; transcription factor bHLH30-like isoform X2
STRINGXP_009761017.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.17e-81bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]