PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009761066.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TALE
Protein Properties Length: 291aa    MW: 33411.2 Da    PI: 8.0719
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009761066.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.56.4e-102182551954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yp+ +e+  LA+++gL+++qV++WF N R +
  XP_009761066.1 218 FEHflHPYPNDSEKLMLASQTGLSKNQVSNWFINARVR 255
                     664459******************************98 PP
2BELL103.41.6e-3380151172
            BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     er+el  k+ kL++lleeV++rY+qy++ ++ + s Fe++ag g+ kpYt+lAl+a+SrhF cL+dai++qi
  XP_009761066.1  80 ERHELYVKIMKLITLLEEVERRYEQYYQHMEEITSTFEVIAGFGAGKPYTALALQAMSRHFSCLRDAIISQI 151
                     799********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.9E-2612149IPR006563POX domain
PfamPF075262.4E-3719147IPR006563POX domain
PROSITE profilePS5007111.985196259IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.6E-27198272IPR009057Homeodomain-like
SMARTSM003891.5E-9199263IPR001356Homeobox domain
CDDcd000861.21E-10199260No hitNo description
SuperFamilySSF466895.99E-18204267IPR009057Homeodomain-like
PfamPF059201.7E-17216255IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MNQSFSNVCG TESFVAATGN SKYLKPTQSL LEELVCAGGK TIDLSNEKFI RRLSRNSKKG  60
SLSLRAMLKA EIPSNELFNE RHELYVKIMK LITLLEEVER RYEQYYQHME EITSTFEVIA  120
GFGAGKPYTA LALQAMSRHF SCLRDAIISQ IYVIRQKMPR DVPKISSGLS HLSLFEKETL  180
QNRMSLQQLG IIQSNRQAWR PIRGLPETSV AILRSWLFEH FLHPYPNDSE KLMLASQTGL  240
SKNQVSNWFI NARVRLWKPM IEEMYKEEFA DSSVDSDPFL NREGVTDSAE E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A3e-16205263563Homeobox protein Meis2
3k2a_B3e-16205263563Homeobox protein Meis2
4xrm_A3e-16205263563Homeobox protein Meis2
4xrm_B3e-16205263563Homeobox protein Meis2
5bng_A3e-16205263159Homeobox protein Meis2
5bng_B3e-16205263159Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3759650.0AF375965.1 Lycopersicon esculentum bell-like homeodomain protein 1 (BL1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009761064.10.0PREDICTED: BEL1-like homeodomain protein 11 isoform X1
RefseqXP_009761065.10.0PREDICTED: BEL1-like homeodomain protein 11 isoform X1
RefseqXP_009761066.10.0PREDICTED: BEL1-like homeodomain protein 11 isoform X2
RefseqXP_016434169.10.0PREDICTED: BEL1-like homeodomain protein 11
RefseqXP_016434177.10.0PREDICTED: BEL1-like homeodomain protein 11
SwissprotQ1PFD11e-100BLH11_ARATH; BEL1-like homeodomain protein 11
TrEMBLA0A1S3X2L30.0A0A1S3X2L3_TOBAC; BEL1-like homeodomain protein 11
TrEMBLA0A1U7V7X00.0A0A1U7V7X0_NICSY; BEL1-like homeodomain protein 11 isoform X2
TrEMBLA0A1U7VFF60.0A0A1U7VFF6_NICSY; BEL1-like homeodomain protein 11 isoform X1
STRINGXP_009761064.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.13e-95BEL1-like homeodomain 11