PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009761217.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NF-YA

Protein Properties

Length: 251aa MW: 28115.3 Da PI: 9.6155

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009761217.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	103.6	1.8e-32	116	172	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p+YVNaKQy++I++RRq Rakle+++kl k+rkpylheSRh hA++R RgsgGrF XP_009761217.1 116 DGPIYVNAKQYHGIMRRRQIRAKLEAQNKL-VKNRKPYLHESRHLHAVNRVRGSGGRF 172 57**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	9.9E-36	114	175	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	35.974	115	175	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	7.7E-28	118	172	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.5E-23	118	140	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	120	140	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	1.5E-23	149	172	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MKSLDPDLQG ETLRLTHSII NSQDEMTTSE KTNSQDQCAS SEYVHDERYG RDMQAQIKPA 60 LFSSQNEVAH STGFSPFGYS DPYMTGLYTA YGPQAFPQMM GIAPTRVPLP LDLAEDGPIY 120 VNAKQYHGIM RRRQIRAKLE AQNKLVKNRK PYLHESRHLH AVNRVRGSGG RFLSSKKVHQ 180 SDPNSYPTNS ISSQDSVERE NSTSAFSSVR KDVNNGVSFQ QQPDHRAFGV SSHMAITMQG 240 NGNQQRAPVV R

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	4e-22	116	185	2	74	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975524	4e-54	HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009761217.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-7-like
Refseq	XP_009761218.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-7-like
TrEMBL	A0A1U7V496	0.0	A0A1U7V496_NICSY; nuclear transcription factor Y subunit A-7-like
STRING	XP_009761217.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5009	23	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72830.1	2e-42	nuclear factor Y, subunit A3