PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009761266.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 263aa MW: 30161.2 Da PI: 9.3189

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009761266.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	50.1	3.6e-16	13	53	1	41
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41 k+i+n+ r+vtfsk r g++KKA EL++L +ae+a+++ s XP_009761266.1 13 KPIDNQNSRHVTFSKWRLGLFKKAGELCILSGAEIAILVQS 53 68************************************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	17.787	5	53	IPR002100	Transcription factor, MADS-box
SMART	SM00432	4.9E-15	5	65	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.83E-17	7	92	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.6E-9	7	27	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.3E-14	15	59	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.6E-9	27	42	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.6E-9	42	63	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MKKTQGPRKI AIKPIDNQNS RHVTFSKWRL GLFKKAGELC ILSGAEIAIL VQSLKRQSFF 60 AFGHLNADAV IDRYLTGKSS SSFLSTVNKL NVQQNNQYYS QICRELEVKK KKKEITENSK 120 IVNNNNNNEV FWWNKSIDEM GIEELEEFMG ALEELKKKIT MRADELSMIN GSSVVPTTST 180 LNNNIARFGA EDQFLNQAAI DYCSSIVPYQ FNQPGDFDEP QQDEVILLPG DSRLNRKGNN 240 IRKEIREKTC DNKRYQKENN HSK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009761266.1	0.0	PREDICTED: agamous-like MADS-box protein AGL62
TrEMBL	A0A1U7V8I4	0.0	A0A1U7V8I4_NICSY; agamous-like MADS-box protein AGL62
STRING	XP_009761266.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2134	22	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	5e-22	AGAMOUS-like 62