PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009761320.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 195aa MW: 22668.8 Da PI: 8.7182

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009761320.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	48.3	3.4e-15	68	160	2	90
FAR1 2 fYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 +Y ++Ak++GF vr+++ s + i++r++v + +++++k +++ +r r+++r++C+ak+ v +e +w+v +++ HnHel XP_009761320.1 68 CYVNFAKQIGFLVRRDRYFGSaEGPVGIYRRDYVFHRASTPRPQKVVEKELQRDRKSSRCNCNAKMCVAREIidkVTRWMVVYFDNVHNHELL 160 7**************99993344569*************999999*************9987655789***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.6E-12	68	160	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MKVLNNTSID FTVGVSRSHC PCGDSKCYIN GEITERSDEE LRHKNIDMDN SDLYKGKVFN 60 SDDETYNCYV NFAKQIGFLV RRDRYFGSAE GPVGIYRRDY VFHRASTPRP QKVVEKELQR 120 DRKSSRCNCN AKMCVAREII DKVTRWMVVY FDNVHNHELL NDKEVKFLPA YRNIDIINQK 180 RITHLAKAGC STSLI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009761320.1	1e-145	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
TrEMBL	A0A1U7VHJ1	1e-144	A0A1U7VHJ1_NICSY; Uncharacterized protein
STRING	XP_009761320.1	1e-144	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7183	7	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	1e-42	FAR1-related sequence 10