PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009761886.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 113aa    MW: 13174.1 Da    PI: 10.4062
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009761886.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.83.9e-30959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtfskRr g+lKKA+E+SvLCda+v +i+fs++gkl+ey++
  XP_009761886.1  9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDADVGLIVFSTKGKLFEYAT 59
                    79***********************************************86 PP
2K-box15.19.6e-0784111936
           K-box   9 leeakaeslqqelakLkkeienLqreqR 36 
                     ++++   s++ e+akLk+++e Lqr+qR
  XP_009761886.1  84 TDHSSPGSWTLEHAKLKARLEVLQRNQR 111
                     56677889******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.917161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-33279IPR002100Transcription factor, MADS-box
CDDcd002651.47E-41279No hitNo description
PRINTSPR004041.9E-31323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.2E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-313859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD ADVGLIVFST KGKLFEYATD  60
SCMERILERY ERYSYAERQP VANTDHSSPG SWTLEHAKLK ARLEVLQRNQ RYT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-22185183MEF2 CHIMERA
6byy_B1e-22185183MEF2 CHIMERA
6byy_C1e-22185183MEF2 CHIMERA
6byy_D1e-22185183MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ5342021e-160DQ534202.1 Nicotiana tabacum fruitfull-like MADS-box protein (FUL) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009761886.13e-80PREDICTED: agamous-like MADS-box protein AGL8 homolog
RefseqXP_016468661.13e-80PREDICTED: agamous-like MADS-box protein AGL8 homolog
SwissprotQ424291e-70AGL8_SOLTU; Agamous-like MADS-box protein AGL8 homolog
TrEMBLA0A1S3ZW896e-79A0A1S3ZW89_TOBAC; agamous-like MADS-box protein AGL8 homolog
TrEMBLA0A1U7VA776e-79A0A1U7VA77_NICSY; agamous-like MADS-box protein AGL8 homolog
STRINGXP_009761886.11e-79(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4992397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.11e-60AGAMOUS-like 8
Publications ? help Back to Top
  1. Kang SG,Hannapel DJ
    Nucleotide sequences of novel potato (Solanum tuberosum L.) MADS-box cDNAs and their expression in vegetative organs.
    Gene, 1995. 166(2): p. 329-30
    [PMID:8543185]