PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009762052.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

YABBY

Protein Properties

Length: 203aa MW: 23015.1 Da PI: 8.9543

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009762052.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	213.2	8.6e-66	8	169	5	170
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsse 99 ++seq+Cy+ CnfCn +lavsvP + lf +vtvrCGhCt++ +vn+a a q +++s +++ + +++++ e +++ +++ ++++ XP_009762052.1 8 TNSEQLCYIPCNFCNIVLAVSVPCSNLFDIVTVRCGHCTNMWTVNMAAAFQSSSSSSWQSHTHHLHQVANYTPPEYKIDFGSSSKCNSRNMAVRP 102 579*******************************************99999999987777777777787777777777666666666655555 PP YABBY 100 klsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +l++n +ee v+rPPekrqrvPsayn+fikeeiqrika+nPdi+hreafs+aaknWahfP+ihfgl XP_009762052.1 103 SLTNNPREERI----VNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDITHREAFSTAAKNWAHFPHIHFGL 169 56555555544....8***************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	4.9E-71	9	169	IPR006780	YABBY protein
SuperFamily	SSF47095	6.94E-8	110	162	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	2.4E-4	123	161	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MATCIDSTNS EQLCYIPCNF CNIVLAVSVP CSNLFDIVTV RCGHCTNMWT VNMAAAFQSS 60 SSSSWQSHTH HLHQVANYTP PEYKIDFGSS SKCNSRNMAV RPSLTNNPRE ERIVNRPPEK 120 RQRVPSAYNQ FIKEEIQRIK ANNPDITHRE AFSTAAKNWA HFPHIHFGLT LETKNQAKLG 180 ASENAEKHII HRAAMPKIKN FTF

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009762052.1	1e-152	PREDICTED: axial regulator YABBY 5-like isoform X1
Refseq	XP_016452662.1	1e-152	PREDICTED: axial regulator YABBY 5-like
Swissprot	Q8GW46	7e-80	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A1S3YL24	1e-150	A0A1S3YL24_TOBAC; axial regulator YABBY 5-like
TrEMBL	A0A1U7V1C3	1e-150	A0A1U7V1C3_NICSY; axial regulator YABBY 5-like isoform X1
STRING	XP_009762052.1	1e-151	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	2e-78	YABBY family protein

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]