PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009762054.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

YABBY

Protein Properties

Length: 156aa MW: 17919.2 Da PI: 10.647

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009762054.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	134.1	1.7e-41	4	122	48	170
YABBY 48 vnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrik 141 vn+a a q +++s +++ + +++++ e +++ +++ ++++ +l + pr + v+rPPekrqrvPsayn+fikeeiqrik XP_009762054.1 4 VNMAAAFQSSSSSSWQSHTHHLHQVANYTPPEYKIDFGSSSKCNSRNMAVRPSL-----TNNPREERiVNRPPEKRQRVPSAYNQFIKEEIQRIK 93 444444444444444344444444444444444444444444333333333344.....4444444439************************ PP YABBY 142 asnPdishreafsaaaknWahfPkihfgl 170 a+nPdi+hreafs+aaknWahfP+ihfgl XP_009762054.1 94 ANNPDITHREAFSTAAKNWAHFPHIHFGL 122 *************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.0E-43	2	122	IPR006780	YABBY protein
SuperFamily	SSF47095	4.06E-8	63	115	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.4E-4	76	114	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence Send to blast
MWTVNMAAAF QSSSSSSWQS HTHHLHQVAN YTPPEYKIDF GSSSKCNSRN MAVRPSLTNN 60 PREERIVNRP PEKRQRVPSA YNQFIKEEIQ RIKANNPDIT HREAFSTAAK NWAHFPHIHF 120 GLTLETKNQA KLGASENAEK HIIHRAAMPK IKNFTF

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ667744	2e-73	KJ667744.1 Solanum sisymbriifolium YAB5 protein mRNA, complete cds.
GenBank	KJ667746	2e-73	KJ667746.1 Solanum virginianum YAB5 protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009762052.1	1e-114	PREDICTED: axial regulator YABBY 5-like isoform X1
Refseq	XP_016452662.1	1e-114	PREDICTED: axial regulator YABBY 5-like
Swissprot	Q8GW46	2e-49	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A1S3YL24	1e-112	A0A1S3YL24_TOBAC; axial regulator YABBY 5-like
TrEMBL	A0A1U7V1C3	1e-112	A0A1U7V1C3_NICSY; axial regulator YABBY 5-like isoform X1
STRING	XP_009762052.1	1e-113	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	4e-48	YABBY family protein

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]