PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009762178.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 159aa    MW: 18676.6 Da    PI: 10.0323
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009762178.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.38.5e-28252151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+ rqvtfskRr g+lKK +E+SvLCda+va+i+fs +gkl+eys+
  XP_009762178.1  2 KRIENKISRQVTFSKRRLGLLKKTHEISVLCDADVALIVFSAKGKLFEYST 52
                    79***********************************************96 PP
2K-box61.33.7e-21871511882
           K-box  18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqk 82 
                      qe  kL ++ie Lqr++Rh++GedL+s  l+e + LeqqL+++lk+iR++K   + +q     +
  XP_009762178.1  87 IQEKPKLMSRIELLQRNIRHYMGEDLDSFCLREFHGLEQQLDTALKRIRARKGLAYEKQRVCHHQ 151
                     58999***********************************************9988888655544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002656.54E-35169No hitNo description
SMARTSM004321.7E-28153IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.703154IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.37E-29179IPR002100Transcription factor, MADS-box
PfamPF003198.7E-24350IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-161631IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-163152IPR002100Transcription factor, MADS-box
PROSITE profilePS5129710.49483159IPR002487Transcription factor, K-box
PfamPF014861.0E-1588144IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MKRIENKISR QVTFSKRRLG LLKKTHEISV LCDADVALIV FSAKGKLFEY STESSMESIL  60
ERYESYSYAE RKLNANDSEP KGLSVNIQEK PKLMSRIELL QRNIRHYMGE DLDSFCLREF  120
HGLEQQLDTA LKRIRARKGL AYEKQRVCHH QKRGICWPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mu6_A8e-17166771Myocyte-specific enhancer factor 2A
3mu6_B8e-17166771Myocyte-specific enhancer factor 2A
3mu6_C8e-17166771Myocyte-specific enhancer factor 2A
3mu6_D8e-17166771Myocyte-specific enhancer factor 2A
6byy_A1e-16167873MEF2 CHIMERA
6byy_B1e-16167873MEF2 CHIMERA
6byy_C1e-16167873MEF2 CHIMERA
6byy_D1e-16167873MEF2 CHIMERA
6bz1_A1e-16167873MEF2 CHIMERA
6bz1_B1e-16167873MEF2 CHIMERA
6bz1_C1e-16167873MEF2 CHIMERA
6bz1_D1e-16167873MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009762178.11e-115PREDICTED: truncated transcription factor CAULIFLOWER D-like isoform X2
SwissprotD7SMN61e-63FULL_VITVI; Agamous-like MADS-box protein FUL-L
TrEMBLA0A1U7V7081e-114A0A1U7V708_NICSY; truncated transcription factor CAULIFLOWER D-like isoform X2
STRINGXP_009762175.15e-96(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.12e-58MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]