PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009762810.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARF
Protein Properties Length: 996aa    MW: 110291 Da    PI: 6.6563
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009762810.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.52.2e-2231132199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++++
  XP_009762810.1  31 FCKTLTASDTSTHGGFSVPRRAAEKIfppldySIQPPA-QELVARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--RDEK 122
                     99*****************************8666555.59************************************************..5688 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     ++l+++++r+
  XP_009762810.1 123 QQLLLGIRRA 132
                     889****997 PP
2Auxin_resp119.42.8e-39157240183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+v+YnPras+seFv++++k+ k+++ ++vs+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+nS+Wr+L+
  XP_009762810.1 157 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKSTYsSQVSLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQ 240
                     79******************************999879********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.15E-4321160IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.6E-4123146IPR015300DNA-binding pseudobarrel domain
CDDcd100176.05E-1930122No hitNo description
SMARTSM010195.4E-2331133IPR003340B3 DNA binding domain
PfamPF023623.3E-2031132IPR003340B3 DNA binding domain
PROSITE profilePS5086311.85731133IPR003340B3 DNA binding domain
PfamPF065072.0E-34157240IPR010525Auxin response factor
PROSITE profilePS5174528.139885969IPR000270PB1 domain
PfamPF023091.2E-6886970IPR033389AUX/IAA domain
SuperFamilySSF542777.55E-7903963No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 996 aa     Download sequence    Send to blast
MTLQPVPSFD KEALLRSDLS MKTNKPQTEF FCKTLTASDT STHGGFSVPR RAAEKIFPPL  60
DYSIQPPAQE LVARDLHDNV WTFRHIYRGQ PKRHLLTTGW SLFVSGKRLF AGDSVLFIRD  120
EKQQLLLGIR RANRQPTNLS SSVLSSDSMH IGILAAAAHA AANNSPFTVF YNPRASPSEF  180
VIPLAKYYKS TYSSQVSLGM RFRMMFETEE SGTRRYMGTI TGISDLDPVR WKNSQWRNLQ  240
VGWDESTAGE RRNRVSIWEI EPVTAPFFIC PTPPFFRSKR PRLPGMPDDD CSDLDGLFKR  300
TMPWLGDDFG MKDPQGLPGL SLVQWMNMQQ NPSLANSMQQ PNYLHSLSGP VLQNVGGGAD  360
LSRQLGLPAA PQLPQHNTLQ FGTQRPNQQG QMPAATLSPV GSIVQSQQQQ LSDISQQPRQ  420
NLINHSMPTN QVQAQLLQAQ SLVQSQNVLQ QQQSLQNQLQ RNLPQQQQIM NQTQQQSFMP  480
SQPSDPLNQQ MHFSDNQLQL QLLQKLHQQQ QSLLAQQSVL QQPQLGPIQD QQKQLLDVSQ  540
NFSRSLATSQ MLDMSQTTST STSLSQSQVV QQQMTSQSHF RFSQPNQQSK LHQQPGILPE  600
LPGQVGQNLP PTTNQFSTNC SSLLTGAAGG GQSVVTDDIP SCSTSPSTNN CQNAVQPSMN  660
GRMHRGTAAG DEATQSSVPL LNSSGFEAMS TNSNLVKDLQ HKSDVKPSVN ISKSPNQGFL  720
APQTYLNTAG PHMDYLDSSS SATSVCFSQN DAQLQQTTNP LSFNNQPVIF RDSQDGEVQG  780
DPRNSVAFGS NMDNQLGLPM MPDPLVTNSL MDSRKDLSNN ISSGGGMLSS YENPKEAQPE  840
LSSSMVSQSF GVPDMAFNSI DSTINDGSFM NRGAWAPPPQ VPRLRTYTKV YKRGAVGRSI  900
DIARYSGYED LKQDLARRFG IEGQLEDRQR IGWKLVYVDH ENDVLLVGDD PWEEFVNCVR  960
CIKILSPQEV QQMSLDGDFG NSLQNQACSS SDGGNV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1261261128388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM1305440.0HM130544.1 Solanum lycopersicum auxin response factor 19 (ARF19) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009762809.10.0PREDICTED: auxin response factor 19-like isoform X1
TrEMBLA0A1U7VKE00.0A0A1U7VKE0_NICSY; Auxin response factor
STRINGXP_009762809.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.11e-173auxin response factor 19