PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009762857.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 194aa    MW: 22237.7 Da    PI: 4.7075
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009762857.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM117.21.6e-3681271128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrF Ptdeelvv++L++k++  +++  +vi+++d+y ++PwdL+ k+ ae ++wyf+s+r +        +r+t +gyWk+ g d++++s+
  XP_009762857.1   8 LPPGFRFYPTDEELVVHFLHRKAALLPCHP-DVIPDLDLYPYDPWDLDGKAMAEGNKWYFYSRRTQ--------SRITGNGYWKSLGLDEPIFSS 93 
                     79*************************999.99**************977778899******9854........799****************98 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +  +vg+kk  +fy g+ p+g+kt+Wvm+e++l
  XP_009762857.1  94 sSCDKVGIKKYYAFYIGEPPEGVKTNWVMQEFSL 127
                     55677***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.18E-475160IPR003441NAC domain
PROSITE profilePS5100545.3078162IPR003441NAC domain
PfamPF023656.6E-219127IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MGDNNVNLPP GFRFYPTDEE LVVHFLHRKA ALLPCHPDVI PDLDLYPYDP WDLDGKAMAE  60
GNKWYFYSRR TQSRITGNGY WKSLGLDEPI FSSSSCDKVG IKKYYAFYIG EPPEGVKTNW  120
VMQEFSLSDS SSSSGTSRSS SRRRSRSKID YSKWVICRVH ERNCDNDDDD GTELSCLDEV  180
FLSLDDLDEI SLPH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-40416316169NAC domain-containing protein 19
3swm_B1e-40416316169NAC domain-containing protein 19
3swm_C1e-40416316169NAC domain-containing protein 19
3swm_D1e-40416316169NAC domain-containing protein 19
3swp_A1e-40416316169NAC domain-containing protein 19
3swp_B1e-40416316169NAC domain-containing protein 19
3swp_C1e-40416316169NAC domain-containing protein 19
3swp_D1e-40416316169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009762857.11e-143PREDICTED: NAC transcription factor 25 isoform X1
RefseqXP_016458989.11e-143PREDICTED: NAC domain-containing protein 104-like
SwissprotQ8GWK67e-91NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A1S3Z3I71e-141A0A1S3Z3I7_TOBAC; NAC domain-containing protein 104-like
TrEMBLA0A1U7V3R31e-141A0A1U7V3R3_NICSY; NAC transcription factor 25 isoform X1
STRINGXP_009762857.11e-142(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37662447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.14e-77xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]