PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009762859.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 165aa MW: 19062.2 Da PI: 4.3467

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009762859.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	103.8	2.3e-32	8	120	1	121
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrF Ptdeelvv++L++k++ +++ +vi+++d+y ++PwdL+ k+ ae ++wyf+s+r + +r+t +gyWk+ g d++++s+ XP_009762859.1 8 LPPGFRFYPTDEELVVHFLHRKAALLPCHP-DVIPDLDLYPYDPWDLDGKAMAEGNKWYFYSRRTQ--------SRITGNGYWKSLGLDEPIFSS 93 79***********************999.99**********977778899**9854........799************98 PP NAM 96 .kgelvglkktLvfykgrapkgektdW 121 + +vg+kk +fy g+ p+g+kt+W XP_009762859.1 94 sSCDKVGIKKYYAFYIGEPPEGVKTNW 120 55677******************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.35E-41	5	131	IPR003441	NAC domain
PROSITE profile	PS51005	37.061	8	154	IPR003441	NAC domain
Pfam	PF02365	3.9E-17	9	126	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010089	Biological Process	xylem development
GO:0043067	Biological Process	regulation of programmed cell death
GO:0048367	Biological Process	shoot system development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
MGDNNVNLPP GFRFYPTDEE LVVHFLHRKA ALLPCHPDVI PDLDLYPYDP WDLDGKAMAE 60 GNKWYFYSRR TQSRITGNGY WKSLGLDEPI FSSSSCDKVG IKKYYAFYIG EPPEGVKTNW 120 DYSKWVICRV HERNCDNDDD DGTELSCLDE VFLSLDDLDE ISLPH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-35	4	141	13	156	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-35	4	141	13	156	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-35	4	141	13	156	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-35	4	141	13	156	NO APICAL MERISTEM PROTEIN
3swm_A	4e-35	4	141	16	159	NAC domain-containing protein 19
3swm_B	4e-35	4	141	16	159	NAC domain-containing protein 19
3swm_C	4e-35	4	141	16	159	NAC domain-containing protein 19
3swm_D	4e-35	4	141	16	159	NAC domain-containing protein 19
3swp_A	4e-35	4	141	16	159	NAC domain-containing protein 19
3swp_B	4e-35	4	141	16	159	NAC domain-containing protein 19
3swp_C	4e-35	4	141	16	159	NAC domain-containing protein 19
3swp_D	4e-35	4	141	16	159	NAC domain-containing protein 19
4dul_A	4e-35	4	141	13	156	NAC domain-containing protein 19
4dul_B	4e-35	4	141	13	156	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009762859.1	1e-120	PREDICTED: NAC transcription factor 25 isoform X2
Swissprot	Q8GWK6	7e-82	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A1U7VKI8	1e-119	A0A1U7VKI8_NICSY; NAC transcription factor 25 isoform X2
STRING	XP_009762857.1	1e-113	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	1e-72	xylem NAC domain 1

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]