PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009763148.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 336aa    MW: 37952.4 Da    PI: 8.0543
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009763148.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP124.31.3e-381232814135
             TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......................ssssa.sec. 73 
                      kdrhski+T++g+RdRR+Rls++ a++fF Lqd+LGfdk+skt+eWLl++++ +i el++                          +s+ sec 
  XP_009763148.1 123 HKDRHSKISTARGLRDRRMRLSLDAARKFFSLQDMLGFDKASKTVEWLLTKSESEIEELAKGnkegeslpkqscsttngigaistA-ISSiSECe 216
                     69***********************************************************9999999999888888888777642.22246676 PP

             TCP  74 ..eaesssssasnsssgkaaksaakskksqksaasalnlak.esrakarararertrekmriknk 135
                       +  ++sss   +++ + ak   k+k ++++ a++  l   esr++ar rarert+ k++++++
  XP_009763148.1 217 viSGTDESSSITDKKKLETAKGPLKKKGKTARRATFDPLITrESRNQARVRARERTKLKKSLSKS 281
                     664444444444444447777777888888888888888888***************99988755 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.0E-41122276IPR005333Transcription factor, TCP
PROSITE profilePS5136933.281123181IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.414258275IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MYPPSNSCNY SPIFNIPSPC MQYGDELFFQ YYHDDYLQEQ QVPLIEDQSL DILAESTETV  60
TNNKETVINS DHSVKVYNIE TVTNSQGLGG NEEKRVEGRE NKRDDMSGTI SIIHGRKNKK  120
CSHKDRHSKI STARGLRDRR MRLSLDAARK FFSLQDMLGF DKASKTVEWL LTKSESEIEE  180
LAKGNKEGES LPKQSCSTTN GIGAISTAIS SISECEVISG TDESSSITDK KKLETAKGPL  240
KKKGKTARRA TFDPLITRES RNQARVRARE RTKLKKSLSK SKAMTHENSA DDCNLVVNFG  300
DWSQFSIFNY QQNAVGISHD QQFTDFQFCG NKLWEV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1239245LKKKGKT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009763148.10.0PREDICTED: transcription factor DICHOTOMA-like isoform X2
RefseqXP_016504161.10.0PREDICTED: transcription factor DICHOTOMA-like isoform X2
TrEMBLA0A1S4CSV10.0A0A1S4CSV1_TOBAC; transcription factor DICHOTOMA-like isoform X2
TrEMBLA0A1U7V9V90.0A0A1U7V9V9_NICSY; transcription factor DICHOTOMA-like isoform X2
STRINGXP_009763147.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.25e-27TCP family protein