PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009763292.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 234aa MW: 26851.3 Da PI: 4.7524

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009763292.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	43.7	3.6e-14	10	50	2	42
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 ri ++s r+ ++kR + ++KKAeE S+ Cd+eva+iifs+ XP_009763292.1 10 RICSESVRNFILIKRATSLFKKAEEFSIFCDVEVAIIIFSE 50 67888999999****************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.3E-9	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	15.572	1	50	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.35E-17	3	94	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.8E-13	10	50	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MARKKLRHTR ICSESVRNFI LIKRATSLFK KAEEFSIFCD VEVAIIIFSE GEIQPIAYPS 60 IGHAKEILMR YLSFSEAERH KRLDKHETYL LEKVNEQEEK ISKVEKMNEG KEMDILFNQL 120 VEEKNINELD ARQLKGLLKL SSAKMAKLNE RKKQVIQPSE SPYRPSDFKL NNNNNPDVAP 180 ATSLMDDLIN DPWFVENMAA NQNEFGTDEF CTEPAPEEGN DNNAGDDGNP EDLN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009763292.1	1e-173	PREDICTED: MADS-box protein AGL24-like
TrEMBL	A0A1U7V523	1e-171	A0A1U7V523_NICSY; MADS-box protein AGL24-like
STRING	XP_009763292.1	1e-172	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA378	20	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06500.1	5e-14	AGAMOUS-like 96