PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009763855.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 396aa    MW: 43482.6 Da    PI: 6.7404
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009763855.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.43.3e-10239287355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR+ri +++  L+el+P +    +k   Ka +L + ++Y++sLq
  XP_009763855.1 239 NSHSLAERVRRERISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 287
                     58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.14E-11234291No hitNo description
SuperFamilySSF474595.37E-17234304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.472236286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-16236304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-7239287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.1E-10242292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MGSKDNGDMR LQQRNGGDTS FNCPSSMPNV DPFSGSGWDP LLSLNQKESF KGSSVVGHNE  60
FANLPYQSSH FGHYPSDPNL VEMVPKIPAF GNESFSELVN IFPLQEQLRG GSCYPNYVKN  120
RGIPTEGTFS KGSLSQEECQ ISGEGAVEAS PNGKRKISGN HSLSTISKNA EGELQKALSR  180
DSSDCSKEQD GKRHKTDQNN ISNLRSKETG KQVKEDSDGG EPPKDNYVHI RAKRGQATNS  240
HSLAERVRRE RISERMRLLQ ELVPGCNKIT GKAVMLDEII NYVQSLQQQV EFLSMKLATV  300
NPELNFDIDR ILPKEMLHQQ TSNAVLLGLG PGMSSSLPFP GISHGSFTGM PGTTPPFHPL  360
PQHVWDNELQ SLLQMGFEAN SSINNMGPNG RSKLDL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269|PubMed:23161888, ECO:0000269|PubMed:24130508}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU9157221e-101CU915722.3 S.lycopersicum DNA sequence from clone LE_HBa-128L9 on chromosome 4, complete sequence.
GenBankHG9754431e-101HG975443.1 Solanum pennellii chromosome ch04, complete genome.
GenBankHG9755161e-101HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009763855.10.0PREDICTED: transcription factor bHLH74
SwissprotQ6NKN91e-76BH074_ARATH; Transcription factor bHLH74
TrEMBLA0A1U7VPP20.0A0A1U7VPP2_NICSY; transcription factor bHLH74
STRINGXP_009763855.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52502435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.17e-63bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]