PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009764550.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 349aa    MW: 39401.2 Da    PI: 6.046
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009764550.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.94.8e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEd +++ +v+ +G g+W++++++ g++R++k+c++rw +yl
   XP_009764550.1 14 RGPWTAEEDAKILAYVASHGIGNWTLVPQKAGLNRCGKSCRLRWTNYL 61
                     89********************************************97 PP
2Myb_DNA-binding49.88.1e-1668110246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++T++E+e +++++k  G++ W++Ia+ ++ gRt++++k++w++
   XP_009764550.1  68 DNFTPQEEECILELHKTIGSR-WSLIAKQLP-GRTDNDVKNYWNT 110
                      68*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.8E-25564IPR009057Homeodomain-like
PROSITE profilePS5129426.276965IPR017930Myb domain
SuperFamilySSF466892.11E-3111108IPR009057Homeodomain-like
SMARTSM007179.1E-151363IPR001005SANT/Myb domain
PfamPF002494.9E-161461IPR001005SANT/Myb domain
CDDcd001672.94E-111661No hitNo description
Gene3DG3DSA:1.10.10.609.4E-2565117IPR009057Homeodomain-like
PROSITE profilePS5129418.96966116IPR017930Myb domain
SMARTSM007179.2E-1566114IPR001005SANT/Myb domain
PfamPF002491.9E-1469110IPR001005SANT/Myb domain
CDDcd001677.04E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048658Biological Processanther wall tapetum development
GO:0052545Biological Processcallose localization
GO:0055046Biological Processmicrogametogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MGRPPCCDKA NIKRGPWTAE EDAKILAYVA SHGIGNWTLV PQKAGLNRCG KSCRLRWTNY  60
LRPDLKHDNF TPQEEECILE LHKTIGSRWS LIAKQLPGRT DNDVKNYWNT KLKKKLVNMG  120
IDPVTHKPFA QVFAEYGKIS GLPIQNTRNN ICLPNNTTEI SKQFPFSSGT PHDKFVHNIM  180
NDQLQENYST QKYTWDLKPQ YQVIHEETLQ TNSFSEVSPL ISSATSFNPT VFSSSSSYAS  240
VQSQVHTTAC SSSTSTWNEF VLGDLCTSTD TEQKQEYQLQ AGIYLSKDLS SSVHKDNPTC  300
GEVTEVEEKQ SVEETTCSSA VDSFVDTILA RDKQMLMDFP PLLDLYLDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-30111164108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754422e-57HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009764550.10.0PREDICTED: transcription factor WER
TrEMBLA0A1U7VRM80.0A0A1U7VRM8_NICSY; transcription factor WER
STRINGXP_009764550.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.12e-78MYB family protein