PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009764774.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 126aa    MW: 14406.6 Da    PI: 8.343
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009764774.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.49.2e-121790994
                    HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3  9 dvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                      +k+g + +p +f  ++ +    ++++  +  + g++  vk+  +++    +l++GW +F+++++L+ gD +vFk++g++efe  v
  XP_009764774.1 17 PGFKHG-IKIPIPFS-KYlN---GCNQEHAILRRAGKKSVVKV--NGR----LLEEGWGKFAEEHDLQLGDCLVFKHEGNMEFE--V 90
                    556665.99999998.6732...35567788899*********..555....6************************9999994..4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.2E-18398IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.44E-18498IPR015300DNA-binding pseudobarrel domain
CDDcd100171.81E-12993No hitNo description
SMARTSM010198.0E-111196IPR003340B3 DNA binding domain
PfamPF023627.3E-91989IPR003340B3 DNA binding domain
PROSITE profilePS508639.3615996IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MMKIPPKKPH FFKPILPGFK HGIKIPIPFS KYLNGCNQEH AILRRAGKKS VVKVNGRLLE  60
EGWGKFAEEH DLQLGDCLVF KHEGNMEFEV SNFGSSKCER EYEQPLQGVS EGEEERDHSC  120
KKITPL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009764774.11e-88PREDICTED: B3 domain-containing protein REM5-like, partial
SwissprotQ9SB802e-23REM5_ARATH; B3 domain-containing protein REM5
TrEMBLA0A1U7VQY73e-87A0A1U7VQY7_NICSY; B3 domain-containing protein REM5-like
STRINGXP_009764774.15e-88(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.16e-19B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]