PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009765229.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 258aa    MW: 29356.1 Da    PI: 7.4014
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009765229.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.43.7e-11129151426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                      +C+++ +tG+C yGd CkF H+
  XP_009765229.1 129 DICKDYKETGYCGYGDACKFLHD 151
                     58********************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902295.1E-9123156IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.061125153IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-7125152IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.3E-11126156IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-9129151IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.105.0E-9186229IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578502.09E-9202229No hitNo description
CDDcd001624.43E-4203229No hitNo description
PROSITE profilePS500898.639203238IPR001841Zinc finger, RING-type
PROSITE patternPS005180218227IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MKKKPAIAGF STGPPKCNKA PLFYFESPKE ITVQNDSRAT ASLETETEFS KDARAIRERV  60
LKLGEEALKG KSKSSADDKL YKGMNQYTDY KAGLRREHTI SSEKACGAHG PLRASAHIRV  120
STRFDYHPDI CKDYKETGYC GYGDACKFLH DWGDYKAGWQ LEKEWEEAAK ERKRKLAMGM  180
LNEDDEDAEK SDEDDDDSLP FACFICRQPF VDPIVTKCKH YFCAHCALKG HKKFCISDVE  240
EILTLGYKST NYLGRSYF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M6e-5336229113288RING finger protein 113A
5z58_M6e-5336229113288RING finger protein 113A
6ff4_t6e-5336229113288RING finger protein 113A
6ff7_t6e-5336229113288RING finger protein 113A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009765229.10.0PREDICTED: zinc finger CCCH domain-containing protein 1-like isoform X2
SwissprotQ8GX841e-109C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A1U7VS820.0A0A1U7VS82_NICSY; zinc finger CCCH domain-containing protein 1-like isoform X2
STRINGXP_009765228.11e-171(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-101C3H family protein